Thank you Bruce. I am not that familiar with this process. How can I look the transformation of a specific vertex index? Is this done still with mri_surf2surf?
Dorian On Wed, Jan 25, 2017 at 4:50 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Dorian > > the transform should be by looking up the spherical coordinates on the > sphere.reg for that vertex index and using that to find the corresponding > fsaverage sphere.reg vertex. > > cheers > Bruce > On Wed, 25 Jan 2017, Dorian P. wrote: > > > Hi, I am trying to find the corresponding coordinate of a vertex in > lh.pial > > in fsaverage space. I manage to transform lh.pial in fsaverage space but > > this does not give corresponding points or a way to do point by point > > transformation. > > I want to do the same with some vertices from lh.pial-outer-smoother. > Trying > > to transform this with mri_surf2surf gives an error because obviously > there > > is no registration of that mesh. Any idea if this can be achieved at all? > > > > Last question: am I correct assuming that the surface to surface > > registration (sphere.reg) does a better job at matching gyri and sulci on > > fsaverage than the simple conversion in MNI305 (aka fsaverage): > > MNI305RAS = TalXFM*Norig*inv(Torig)*[tkrR tkrA tkrS 1]' > > > > Thank you. > > Dorian > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
