Try mri_surfcluster. Run it with --help to get usage. You can set the threshold with --fdr. Make sure to use the --mask option passing it the mask.mgh from the qdec output
On 01/22/2017 07:56 PM, Katherine Damme wrote: > Hello Everyone, > > Is there a way to extract the significant clusters as masks from > significant group comparisons using qdec? > > All I can seem to find is mri_glmfit-sim which doesn't quite > replicate the QDEC FDR 0.05 output and doesn't seem to make anything > that I could extract as a label, or hand drawing an ROI. > > I am working with a longitudinal model of cortical thickness, and > would like to extract the average thickness of each significant > cluster to understand the change in thickness. > > Thank you. > > Kate Damme > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
