Hi,
Thank you so much for your answer ! I'm a debutant with FreeSurfer, can you please add some details please ? Or give me a website or something like that a can look at ? Thank you so much for your help, Lisa ________________________________ De : freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> de la part de Dr. M. Shahid <mohammad.sha...@gmail.com> Envoyé : mardi 17 janvier 2017 14:44 À : Freesurfer support list Objet : Re: [Freesurfer] ROI with precise coordinates Hi, Yes you can use fslmaths and Ants ImageMath to make an ROI from the given mni coordinates. The command is like fslmaths MNI_T1...gz -mul 0 -add 1 roi xmin xsize ymin ysize zmin zsize tmin tsize ROI_name. For a box of 10mm , you can use fslmaths kernel boxv... or for a sphere you can use ImageMath MD input sphere-radius Best regards, -- Shahid. On Mon, Jan 9, 2017 at 3:46 PM, Lisa Delalande <delalande.l...@outlook.fr<mailto:delalande.l...@outlook.fr>> wrote: Dear all, I would like to know how to make an ROI an FreeSurfer/QDEC with precise coordinates. More precisely, I want an ROI called IFC consisting of combined pars opercularis and pars triangularis and with a box of 10 x 10 x 10 mm size, centered at MNI coordinates 10, -15,- 5. Does a command line exists for that ? It is possible without drawing the label ? Thanks in advance for your help, Best regards. And I wish you a Happy New Year 2017 ! Lisa _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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