Hi, Yes you can use fslmaths and Ants ImageMath to make an ROI from the given mni coordinates. The command is like fslmaths MNI_T1...gz -mul 0 -add 1 roi xmin xsize ymin ysize zmin zsize tmin tsize ROI_name. For a box of 10mm , you can use fslmaths kernel boxv... or for a sphere you can use ImageMath MD input sphere-radius
Best regards, -- Shahid. On Mon, Jan 9, 2017 at 3:46 PM, Lisa Delalande <delalande.l...@outlook.fr> wrote: > Dear all, > > > I would like to know how to make an ROI an FreeSurfer/QDEC with precise > coordinates. More precisely, I want an ROI called IFC consisting of > combined pars opercularis and pars triangularis and with a box of 10 x 10 x > 10 mm size, centered at MNI coordinates 10, -15,- 5. Does a command line > exists for that ? It is possible without drawing the label ? > > > > Thanks in advance for your help, > > Best regards. > > And I wish you a Happy New Year 2017 ! > > > Lisa > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
