The LGI routines run matlab (even though you never actually run any
matlab commands yourself). But you have to make sure that matlab knows
where the LGI matlab routines are. To do this you must modify your
matlab ~/matlab/startup.m file to add the path to the LGI routines to
your path. To do this, add the following lines to your startup.m
FSH = getenv('FREESURFER_HOME');
fshmatlab = sprintf('%s/matlab',FSH);
path(path,fshmatlab);
clear fshmatlab FSH;
On 12/13/16 10:10 AM, André Schmidt wrote:
Dear experts
I am trying to compute the local gyrification index but I am not sure
how I have to do the following:
"You will also need $FREESURFER_HOME/matlab in your matlab path set up
in your ~/matlab/starup.m script."
Can you please quickly help me what I need to type in the terminal to
do this in order to run recon-all -s <subj> -localGI?
Many thanks for your help!
Best wishes
André
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