Hello, freesurfer experts:
I have a question, recently, I use the aparcstats2label comamnd, and get the
result file, and I use tksurfer to display the desikan atlas(?h.aparc.annot),
and I want to corresponds the labels between this two, but in my
aparcstats2label result file, i can not find the corpuscallosum which is the
No.4 label in tksurfer, to be specific, here is the label ID in desikan atlas
in tksurfer:
aparc_lables = ['unknown', 'bankssts', 'caudalanteriorcingulate',
'caudalmiddlefrontal', 'corpuscallosum', 'cuneus',
'entorhinal', 'fusiform', 'inferiorparietal',
'inferiortemporal', 'isthmuscingulate',
'lateraloccipital', 'lateralorbitofrontal', 'lingual',
'medialorbitofrontal',
'middletemporal', 'parahippocampal', 'paracentral',
'parsopercularis', 'parsorbitalis',
'parstriangularis', 'pericalcarine', 'postcentral',
'posteriorcingulate', 'precentral', 'precuneus',
'rostralanteriorcingulate', 'rostralmiddlefrontal',
'superiorfrontal',
'superiorparietal', 'superiortemporal', 'supramarginal',
'frontalpole', 'temporalpole',
'transversetemporal', 'insula']
which has 36 labels, and I dont understand which label is unknow....
on the contrary, the result from aparcstat2table have 36 columns(includint
subject_id and meanthickness),
so bacially, they have just 34 labels add one 'unknown', it should have 35
labels, but I did not find the lable
'corpuscallosum', Can someone help me???
The result file for aparcstat2table file is attached:)
Thanks in advance
| lh.aparc.thickness | lh_bankssts_thickness | lh_caudalanteriorcingulate_thickness | lh_caudalmiddlefrontal_thickness | lh_cuneus_thickness | lh_entorhinal_thickness | lh_fusiform_thickness | lh_inferiorparietal_thickness | lh_inferiortemporal_thickness | lh_isthmuscingulate_thickness | lh_lateraloccipital_thickness | lh_lateralorbitofrontal_thickness | lh_lingual_thickness | lh_medialorbitofrontal_thickness | lh_middletemporal_thickness | lh_parahippocampal_thickness | lh_paracentral_thickness | lh_parsopercularis_thickness | lh_parsorbitalis_thickness | lh_parstriangularis_thickness | lh_pericalcarine_thickness | lh_postcentral_thickness | lh_posteriorcingulate_thickness | lh_precentral_thickness | lh_precuneus_thickness | lh_rostralanteriorcingulate_thickness | lh_rostralmiddlefrontal_thickness | lh_superiorfrontal_thickness | lh_superiorparietal_thickness | lh_superiortemporal_thickness | lh_supramarginal_thickness | lh_frontalpole_thickness | lh_temporalpole_thickness | lh_transversetemporal_thickness | lh_insula_thickness | lh_MeanThickness_thickness |
| /aramis/dataARAMIS/users/junhao.wen/PhD/PREVDEMALS/Freesurfer/Reconall/reconall_GENFI/clinica_reconall_result/micheal_computer/analysis-series-R4/subjects/sub-PREVDEMALS0010001BE/ses-M0/t1/freesurfer-cross-sectional/sub-PREVDEMALS0010001BE_ses-M0 | 2.048 | 2.897 | 1.961 | 1.816 | 3.086 | 2.307 | 2.062 | 2.256 | 1.94 | 2.005 | 1.971 | 1.608 | 1.825 | 2.207 | 2.209 | 2.152 | 1.813 | 2.253 | 1.768 | 1.412 | 1.813 | 2.375 | 2.351 | 1.773 | 2.676 | 1.936 | 2.198 | 1.812 | 2.223 | 1.819 | 2.225 | 3.151 | 2.448 | 2.533 | 2.05109 |
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