Hi Mike
it's hard to say without looking at the data. if you upload the subject
dir we will take a look
Bruce
On Thu, 24 Nov 2016, Michael Craig wrote:
Hi All,
I am trying to run recon-all on the Allen Brain Institute T1 images. It works
without any issue on all but one subject (H0351.1009).
I saw this post from a few years ago describing the exact problem I’m having,
but don’t see a solution. Has anyone figured out how to get this subject to run
in recon-all? Or is it simply a matter of there not being enough contrast
between grey and white matter? Thanks for the help!
https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-July/031482.html
Best wishes,
Mike
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