Hi John
it means that the talairach transform that was computed was extremely
unlikely and deemed to be probably incorrect. Frequently this happens if
you start with images (like analyze) that don't contain accurate direction
cosine information. You can check this by bringing one of the volumes in
freeview and checking to make sure that the anatomical directions we show
(e.g. anterior/posterior) correspond to the true anatomy. Sometimes
abnormal anatomiies like huge ventricles can also make it fail, but you
need to figure out which one it is before deciding what to do
cheers
Bruce
On Fri, 11 Nov 2016, John
Anderson wrote:
Dear Freesurfer experts,
I ran the following command on a T1 image
recon-all -subjid 089 -all -qcache
and I got the following error message:
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm
***FAILED*** (p=0.0344, pval=0.0034 < threshold=0.0050)
I highly appreciate an explanation for the meaning of this error and how to
fix it.
Best
John
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