Thanks a lot Bruce! This is extremely useful!
A. ________________________________ De : freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> de la part de Bruce Fischl <fis...@nmr.mgh.harvard.edu> Envoyé : mardi 27 septembre 2016 17:23:30 À : Freesurfer support list Objet : Re: [Freesurfer] TR: volume to surface for ROI already in orig space Hi Alain I believe if you specify the transform as identity.nofile that should do the trick. Most of our tools accept this cheers Bruce On Tue, 27 Sep 2016, Alain Imaging wrote: > > > > > ____________________________________________________________________________ > De : Alain Imaging <alain_imag...@outlook.com> > Envoyé : lundi 26 septembre 2016 17:17 > À : freesurfer@nmr.mgh.harvard.edu > Objet : volume to surface for ROI already in orig space > > Hi everyone, > > > I've used a couple of ROIs that have been drawn in the mni space for > connectivity analysis. Since I have my connectivity results shown on a > surface, I want to show the ROIs in the same way. > > I have checked with freeview, and the ROIs are correctly placed in the > fsaverage/orig.mgz space. > > I wanted to use mri_vol2surf in order to reach my aim, however this command > require a transformation matrix, and in this particular case I don' really > know which one to use, as I don't want to change space. I thought that maybe > i could provide an identity matrix, but I don't know what would it be an > acceptable format for it. > > > Have you got any suggestion ? > > > Alain > > >
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