Hi All, I have been using the following command line to convert my dcm/IMA files into a nii files.
mri_convert -it dicom xxxxx.dcm xxxx.nii (where xxxx are the name of my files) I realized now that I did not specify the output file type (-ot nii) before the file name. Is this a big concern or are these files still good to use on Freesurfer? In the past, I have toggled between the original volume and the new nii file and everything looks the same. Also, when I have ran it through the standard Freesurfer processing stream, it seems to work fine and there are no errors. Thank you in advance for your help Best, Tamara
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