Did you run out of disk space? The recon could have been aborted during the middle of the write (but unlikely). If the edits were in the brainmask, then there is not much you can do. If the edits were not in the brainmask, you can just rerun starting at the brainmask and the edits will be preserved.
On 09/13/2016 01:31 PM, Rachel Romeo wrote: > Hi all, > > After doing some manual edits to the wm and pial masks, I recently had > a recon fail with the following error: > > > mghRead(/subject_177/mri/brainmask.mgz, -1): read error > > Invalid argument > > mri_em_register: could not open mask volume brainmask.mgz. > > > When trying to load either the brainmask.mgz or wm.mgz into freeview, > these also fail, e.g.: > > mghRead(/subject_177/mri/brainmask.mgz, -1): read error > > MRIread failed: Unable to read from /subject_177/mri/brainmask.mgz > > > All other volumes load fine. > > Can you think of what I might have done to corrupt these volumes? And > is there a way to revert to the most recent version, so that I don't > lose previous edits? > > Thanks so much, > Rachel > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
