Hi Martin, We run all cross, base and long with 5.3. I guess the problem maybe we run cross on a computer and then copy the results to another computer to run the cross and long. the "*fsaverage" is not copied. Does this matter？*
Best， Jinsong On Wed, Jul 20, 2016 at 12:21 AM, Martin Reuter <mreu...@nmr.mgh.harvard.edu > wrote: > Hi Jinsong, > > I have never seen this. Stable 5.3 is very stable and I doubt it is a bug. > How did you process base and cross sectionals? Also with 5.3 ? > > I would recommend to process cross and base with 5.3, then re-run the long > and see if you can replicate this problem. Let me know what happens. > > Best, Martin > > > > On Jul 20, 2016, at 12:48 AM, Jinsong Tang <tangjinson...@gmail.com> > wrote: > > > > Hi all, > > > > I found an error during the longitudinal -long stream: > > > > recon-all -long P1001-2 P1001 -all > > ...... > > > > FREESURFER_HOME /space/raid/fmri/freesurfer > > Actual FREESURFER_HOME /space/raid/fmri/freesurfer > > build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 > > Linux funcserv1 3.16.7-35-desktop #1 SMP PREEMPT Sun Feb 7 17:32:21 UTC > 2016 (832c776) x86_64 x86_64 x86_64 GNU/Linux > > ...... > > > > mris_spherical_average -erode 1 -orig white -t 0.4 -o P1001-2.long.P1001 > label lh.entorhinal lh sphere.reg lh.EC_average lh.entorhinal_exvivo.label > > > > painting output onto subject P1001-2.long.P1001. > > processing subject lh.EC_average... > > > MRISread(/space/raid7/data/london/data/mri/other/jinsong/oneil/ChildOCD/output/lh.EC_average/surf/lh.sphere.reg): > could not open file > > eroding label 1 times before writing > > thresholding label stat at 0.400 before writing > > Not a directory > > mris_spherical_average: could not read surface file > /space/raid7/data/london/data/mri/other/jinsong/oneil/ChildOCD/output/lh.EC_average/surf/lh.sphere.reg > > Not a directory > > Linux funcserv1 3.16.7-35-desktop #1 SMP PREEMPT Sun Feb 7 17:32:21 UTC > 2016 (832c776) x86_64 x86_64 x86_64 GNU/Linux > > > > recon-all -s P1001-2.long.P1001 exited with ERRORS at Fri Jul 8 > 21:33:02 PDT 2016 > > > > > > Please help me fix this error! > > > > Thanks and best regards, > > > > Jinsong > > > > > > <recon-all.log>_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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