I have the very same problem! Hope to be able to solve it with the guidance
from Freesurfer.
Best Regards,
Mahtab.
Friday, July 8, 2016, 01:43 +0100 from walidyassi...@gmail.com
<walidyassi...@gmail.com>:
>Hello,
>
>Sorry for raising this questions again. I posted this questions a while ago
>(Twice), but i haven't gotten an answer yet.
>Can i at least know if i can tweak something for this to work? or just give
>up?
>I tried downgrading Xquatrz, to 2.7.8, but it still doesn't work! My matlab is
>2016a, could this be the problem?
>
>
>Thank you for letting me know
>
>WY
>
>On Sat, Jun 25, 2016 at 10:39 AM, Walid Yassin < walidyassi...@gmail.com >
>wrote:
>>Hello again,
>>
>>Sorry for posting twice, but does someone know what might be the problem?
>>Thank you in advance.
>>I’m trying to run recon-all -lgi - s Subjectname on my data but i am
getting this error!
>>*******************************************************
Error in dsearchn (line 79)
[d(i),t(i)] = min(sum((x-yi).^2,2));
Error in mesh_vertex_nearest (line 29)
nearestIndex = dsearchn(vertices,points);
Error in reorganize_verticeslist (line 28)
[nextindex,nextvalue]=mesh_vertex_nearest(mesh_total.vertices(remaininglist,:),mesh_total.vertices(verticeslist(start_vertex),:));
Error in make_roi_paths (line 93)
reorglist = reorganize_verticeslist (mesh_total, A, mesh_outer, perim,
verticeslist, step);
>>
ERROR: make_roi_paths did not complete successfully!
*******************************************************
*I checked the archives and saw a reply by Marie to someone who had the
same problem.*
*She recommended changing the info inside “SearchProjectionByPial.m" in the
~/Application/freesurfer/matlab directory to:*
*******************************************************
function [verticeslist]=SearchProjectionOnPial(mesh_total,mesh_outer,perim,
step)
% step is typically set between 5 and 10. Default is 7, increasing it will
% limit redundancies in the resulting path file.
verticeslist=[];
si=max(size(perim));
for t=1:step:si
[nearestIndexMT,nearestValuesMT]=mesh_vertex_nearest(mesh_total.vertices,mesh_outer.vertices(perim(t),:));
verticeslist= [verticeslist nearestIndexMT];
end
verticeslist=unique(vertices list);
*******************************************************
Which i did, but i am still getting this error!*
Any recommendations on what to do next? I am running MATLAB_R2016.
Thank you in advance,
WY
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