For the normal inflated brain, wmparc.mgz has values: 0~85, 251~255,
1000~1035, 2000~2035, 3000~3035, 4000~4035, and 5001, 5002.
I have two unfinished one hemi inflation brains, one wmparc.mgz has
values 0 ~176, and the other has 0~156. No other values found.
On 7/7/2016 11:25 AM, Bruce Fischl wrote:
what values does the wmparc have?
On Thu, 7 Jul 2016, Kang, XJ wrote:
Thank you for your reply.
The image "wmparc.mgz" does not have the correct values. I am not
sure if
that because of the interruption of the procedures or not. Also I
need to
use some other files.
Thank you for your explanations. I will wait for the future
corrections on
the problem.
On 7/7/2016 11:11 AM, Bruce Fischl wrote:
Hi XJ
this is a known problem but we haven't gotten to fixing it yet.
Do you need it to complete that step? It is pretty close to the
end so it may be that the error doesn't effect you
cheers
Bruce
On Thu, 7 Jul 2016, Kang, XJ wrote:
Hi,
I am trying to inflate right hemisphere only using
the commands:
recon-all -autorecon2 -hemi rh -subjid 160526
recon-all -autorecon3 -hemi rh -subjid 160526
The inflation stopped at the step:
mris_volmask --label_left_white 2
--label_left_ribbon 3 --label_right_white
41 --label_right_ribbon 42 --save_ribbon 160526
SUBJECTS_DIR is /home/sata3/FreeSurfer/Subjects
MRISread(/home/sata3/FreeSurfer/Subjects/160526/surf/lh.white):
could not
open file
The program "mris_volmask" needs to read "lh.white",
which is not generated.
Any expert has any suggestions? Maybe I didn't use
the commands correctly?
Thank you for your help.
XJ Kang
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