Hi Baojuan, that coordinate will be mni305 space. Is that what you want? On 07/06/2016 04:17 PM, Li, Baojuan wrote: > Dear Freesurfer experts, > > > I am using MNE (with MEG data) to define my ROIs for a connectivity > analysis. I am going through the following steps to get the MNI > coordinates of the regions: > > 1. Morph the subject's brain to fslaverage; > > 2. Load the inflated surface of fslaverage to MNE analyze; > > 3. Look for regions that are activated during my task; > > 3. Use view>show coordinates to show the coordinates of the vertex; > > 4. The surface RAS (MRI) coordinates are shown; > > 5. Used these coordinates as MNI coordinates. > > Because I was using SPM in the past and am quite new to freesurfer, I > strongly hope someone can help me to check if I have done it > correctly. Thank you so much for your help! > > Best wishes, > Baojuan > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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