Hi Rito,
I just read this today myself "Select a few control points around your
trouble areas, space them out throughout the brain and on different
slices. You want to pick points in a region where the wm intensity is
lower than it should be (that is, having a voxel value less than 110)."
from
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/ControlPoints_freeview
Could it be that those control points grasp voxels that already have an
intensity of at least 110?
Best wishes,
Barbara
On 06/07/2016 17:25, Ritobrato Datta wrote:
Hi All,
We have run recon-all on T1 FLASH images have identified regions where the
sulci were included inside the white matter boundary. We added controls points
around the sulci (please see attached pic) and reran recon-all as follows
recon-all -autorecon2-cp -autorecon3 -subjid <subject>
but on a lot of instances, the specified control points were not incorporated
(please see attached image). How do we fix this, now that we have already run
the recon-all with -autorecon2-cp and the error persists ?
Can someone please suggest ?
Thank you,
Rito and Jack
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