Dear all, We are working on this; I'll write again when the problem is solved (hopefully soon!)
Cheers Eugenio Juan Eugenio Iglesias Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of pierre deman <deman.pie...@gmail.com> Sent: Tuesday, July 5, 2016 7:04:21 PM To: Freesurfer support list Subject: Re: [Freesurfer] Hippocampal Subfields Segmentation Hi, I still have a problem as well with the subfields segmentation (ubuntu 14.04, with the files .ctf) Cheers, Pierre Hello FreeSurfer Experts, I'm having issues with the hippocampal subfields segmentation using OS X Yosemite v10.10.5, Freesurfer dev version 6.0, Freesurfer Subject Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 Current Stamp: freesurfer-Linux-centos6_x86_64-dev-20160616-8264611. I ran the recon-all -s VE002 -hippocampal-subfields-T1 command and keep getting an error message : Error:CTF file '/usr/local/freesurfer-dev/bin/segmentSubjectT1_autoEstimateAlveusML.ctf' failed to open for 'Read' access. Error message: 'Open a zip file for read/modify failed.' The segmented hippocampal files as described on free surfer wiki cannot be found under the subject 'mri' folder. I understand other users have complained of a similar issue within the last week. I'd ve grateful if you could assist me with the issue above. Many thanks Permesh This message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please send it back to me, and immediately delete it. Please do not use, copy or disclose the information contained in this message or in any attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham. This message has been checked for viruses but the contents of an attachment may still contain software viruses which could damage your computer system, you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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