Hi Hsiang-Yuan, That's because the header information is different. You can do the following:
>> mri_vol2vol --mov Yeo2011Parcellation.nii.gz --targ >> FSL_MNI2mm_template.nii.gz --regheader --nearest --o Yeo2011_FSL2mm.nii.gz The output file "Yeo2011_FSL2mm.nii.gz" should have an orientation compatible with mricron. Can you let me know if this works. Thanks, Thomas On Mon, Jul 4, 2016 at 12:58 AM, Hsiang-Yuan Lin <louisli...@gmail.com> wrote: > Hi Prof. Yeo, > > I have problems utilizing yeo 7/17 cortical network parcellation maps as > templates in MRIcron (I aim to use your cortical parcellation maps to > underlay my findings in order to derive the implications based on iFC > networks). To be specific, there is an orientation problem in the current > version of parcellation maps in MNI space. > > Thank you for your help in advance. > > Best, > Hsiang-Yuan > > -- > Hsiang-Yuan Lin, M.D. > Attending Psychiatrist & Adjunct Lecturer > Department of Psychiatry & Child Mental Health Center > National Taiwan University Hospital and College of Medicine > email: louisli...@gmail.com > CV: > https://drive.google.com/file/d/0B3jQGSXih2aeY2o1QnJwUVJjU1U/view?usp=sharing > https://www.researchgate.net/profile/Hsiang_Yuan_Lin2 > > > > -- > Hsiang-Yuan Lin, M.D. > Attending Psychiatrist & Adjunct Lecturer > Department of Psychiatry & Child Mental Health Center > National Taiwan University Hospital and College of Medicine > email: louisli...@gmail.com > CV: > https://drive.google.com/file/d/0B3jQGSXih2aeY2o1QnJwUVJjU1U/view?usp=sharing > https://www.researchgate.net/profile/Hsiang_Yuan_Lin2 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
