Hi Marja
what did you visualize it in? I would suggest freeview
cheers
Bruce
On Tue, 14 Jun 2016,
Marja Caverlé wrote:
Hi Bruce,
I converted the images with MRIconvert, then I swapped them in FSL with
swapdim.
I checked the images by opening the original dicoms and the converted
niftis, and then visually compared them (since the heads are not very
symmetrical that was not too hard).
Best,
Marja
On Tue, Jun 14, 2016 at 12:35 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Marja
how did you swap them? And more importantly, how did you check
that the orientations were correct after conversion?
cheers
Bruce
On Mon, 13 Jun 2016, Marja Caverlé wrote:
Hi guys,
Just a quick question; I have converted my original
DICOMs into niftis.
After the conversion I manually checked whether the
orientations were still
the same, and they were not, so I swapped them.
After this I did a recon
-all.
A lot of my results are at one side while I expected
them in the other
hemisphere. Is there any chance that the recon -all
swapped left and right?
How to check for this? I just want to be sure that I
am really talking about
the right hemisphere.
Thanks!
Best,
Marja
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