Hello, Sorry for my late reply but I just tried these commands today. In fact, I don't have mris_left_right_register on Freesurfer 5.3 so I used this one : https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev_binaries/ and it seems to work.
Concerning mris_apply_reg, I am not sure how to use it. 1) My custom label is on fsaverage. I use the command: mri_label2label --srcsubject fsaverage --srclabel fsaverage/lh.manual_label.label --trgsubject IdSubject --trglabel IdSubject/lh.manual_label.label --hemi lh --regmethod surface to come back to the native space 2) mris_left_right_register enables me to have symetric hemispheres on the subject 3) Then I want to correspond my label (defined on left hemisphere) to the right hemisphere. I specify IdSubject/lh.manual_label.label for the --src-label flag but the output flag, is " --streg lh.sphere rh.sphere.left_right" correct ? I can choose between "--trg trgvalfile" and "--streg srcreg1 trgreg1 " but I don't know what is the difference and how to use it. (To be sure, do I need to use one on these following flags: --jac : use jacobian correction --no-rev : do not do reverse mapping --randn : replace input with WGN --ones : replace input with ones ?) Alexandre 2016-05-04 21:07 GMT+02:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu>: > > ive put a copy here > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_apply_reg > > > On 05/03/2016 04:21 AM, Alexandre Routier wrote: > > Hello Douglas, > > > > Unfortunately, I didn't find the command mris_apply_reg in FreeSurfer > > 5.3. Is there anything to do to solve this problem ? > > > > Alex > > > > 2016-04-28 18:15 GMT+02:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu>>: > > > > You can use mris_left_right_register, then use mris_apply_reg with > the > > --src-label option. I can't remember whether these are in 5.3 (or > > whether 5.3 has the --src-label), so let me know if you need updates > > > > > > On 04/28/2016 09:06 AM, Alexandre Routier wrote: > > > Hello everyone, > > > > > > We used tksurfer to draw a specific region on the left hemisphere > of > > > fsaverage subject and we would like to automatically register the > > > label from the left hemisphere to the right hemisphere. > > > > > > Since FreeSurfer provides tools to compute a symmetric fsaverage > > > (https://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi), I was > > wondering if > > > there was any command to have the manually drawn label on the left > > > hemisphere to the right hemisphere. > > > > > > Thanks in advance for your help. > > > Alexandre > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > > Phone Number: 617-724-2358 > > Fax: 617-726-7422 > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > Outgoing: > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to > > whom it is > > addressed. If you believe this e-mail was sent to you in error and > > the e-mail > > contains patient information, please contact the Partners > > Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to > > you in error > > but does not contain patient information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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