Thanks very much. That did it. PB On Wed, May 11, 2016 at 10:27 AM, Douglas Greve <gr...@nmr.mgh.harvard.edu> wrote:
> Register your average subject to each individual with mri_coreg (see > below) using --s subject --dof 12, then use mri_label2vol with --seg > ROI.nii.gz to map the ROI into the individual space. If the ROI is > surface-based, then you could recon-all your average, map the ROI to the > surface with mri_vol2surf, then to the individual subject with mri_surf2surf > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg > > > On 5/11/16 9:40 AM, Patrick Beukema wrote: > > The average subject is the average of my own subjects (18). I registered > each individual subject's functional data to the average subject with > spm_register. > > > On Tue, May 10, 2016 at 5:43 PM, Douglas N Greve < > gr...@nmr.mgh.harvard.edu> wrote: > >> What is the average subject? How did you compute the registration >> between the average subject volume and the individual? >> >> On 05/10/2016 01:37 PM, Patrick Beukema wrote: >> > Hi, >> > I am trying to register a volumetric roi from an average subject that >> > I created to each individual subject's functional space. I have the >> > transformation matrices that I applied to the functional data to bring >> > them into the average space. When I apply the inverse of those >> > transforms to the roi, the results are way off so I think I must be >> > missing something. >> > >> > 1. I created a volume from a label with mri_label2vol. >> > 2. I map the volume in the average space to the native functional >> > space with mri_vol2vol. >> > >> > I take it this is not correct and would appreciate any guidance. >> > Thank you, >> > pb >> > >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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