Yes. Thank you! Sent from my iPhone
> On May 5, 2016, at 11:09 AM, Ani Varjabedian <a...@nmr.mgh.harvard.edu> wrote: > > Hi Sarah, > > If you are using 5.1 you only have one button for editing, the head with the > pencil in it, like you shared in your screenshot. If you click on that it > will open up a box that is titled "voxel editing", but you should also see a > checkbox at the top of it for "recon editing" (I attached a screenshot). If > you click the checkbox you will see that the brush value gets set to 255 and > the erasure value gets set to 1. This is recon editing mode and it locks in > the values 255 and 1 because these are the values that FS looks for when you > re-run the subject to see if the user made any changes. If you accidentally > edited with different values, (say 0 instead of 1) this is where you could > "run into problems down the line". > > In newer versions of freeview, we have two buttons for editing (attached > screenshot). One that is just for editing the aseg (which we call voxel > edit), and a separate button for recon editing that looks like a head with > an R in it. So in newer versions, if you want to recon edit, you just click > on the head with an R and it automatically puts you in "recon mode". > > Does this make sense? > > You can try downloading the latest version of freeview to see what I mean. > But you should be fine using the version you have, just make sure to click > the checkbox for "recon editing" so that your brushes are set to the right > values! > > Hope this helps, > Ani > >> On 05/04/2016 08:34 PM, Bruce Fischl wrote: >> Hi Sarah >> >> no, I don't think it is. The recon edit for example will set voxels to >> "1" not "0" when erase so that we can keep track of them. If you are >> editing as part of the recon-all stream you are better off using it than >> just plain voxel editing. >> >> cheers >> Bruce >>> On Wed, 4 May 2016, Burke,Sarah E wrote: >>> >>> Douglas, can you please let me know if the voxel edit button is appropriate >>> to use in place of the recon edit? >>> >>> Thanks, >>> >>> Sarah >>> >>> Sent from my iPhone >>> >>>> On May 3, 2016, at 3:04 PM, Burke,Sarah E <sarahebu...@ufl.edu> wrote: >>>> >>>> >>>> Is this information correct? >>>> >>>>> On May 2, 2016, at 3:55 PM, Burke,Sarah E <sarahebu...@ufl.edu> wrote: >>>>> >>>>> https://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg38934.html >>>>> >>>>> ________________________________________ >>>>> From: freesurfer-boun...@nmr.mgh.harvard.edu >>>>> <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve >>>>> <gr...@nmr.mgh.harvard.edu> >>>>> Sent: Monday, May 2, 2016 3:49 PM >>>>> To: freesurfer@nmr.mgh.harvard.edu >>>>> Subject: Re: [Freesurfer] no recon button >>>>> >>>>> Can you send us a link to the email you are speaking about? >>>>> >>>>>> On 05/02/2016 03:29 PM, Burke,Sarah E wrote: >>>>>> It opens a box that says "voxel edit" This allows me to edit the images >>>>>> accordingly, however I read in the email forum that this may create some >>>>>> issues further on down the line? >>>>>> >>>>>> ________________________________________ >>>>>> From: freesurfer-boun...@nmr.mgh.harvard.edu >>>>>> <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve >>>>>> <gr...@nmr.mgh.harvard.edu> >>>>>> Sent: Monday, May 2, 2016 3:26 PM >>>>>> To: freesurfer@nmr.mgh.harvard.edu >>>>>> Subject: Re: [Freesurfer] no recon button >>>>>> >>>>>> what happens when you click on the button with the pencil in it? The one >>>>>> just above the "S" in "Surfaces" >>>>>> >>>>>>> On 05/02/2016 02:58 PM, Burke,Sarah E wrote: >>>>>>> >>>>>>> >>>>>>> >>>>>>> ------------------------------------------------------------------------ >>>>>>> *From:* freesurfer-boun...@nmr.mgh.harvard.edu >>>>>>> <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas Greve >>>>>>> <gr...@nmr.mgh.harvard.edu> >>>>>>> *Sent:* Monday, May 2, 2016 2:31 PM >>>>>>> *To:* freesurfer@nmr.mgh.harvard.edu >>>>>>> *Subject:* Re: [Freesurfer] no recon button >>>>>>> Can you send a snapshot of your Freeview window? The Recon Edit button >>>>>>> looks like a sagittal slice with an "R" in it and a pencil pointing to >>>>>>> it. >>>>>>> >>>>>>>> On 5/2/16 1:44 PM, Burke,Sarah E wrote: >>>>>>>> Thank you Douglas. However, in the tutorial for editing output, it >>>>>>>> says to use the recon edit button to manually perform edits. After >>>>>>>> this step, I use the command line and recon-all. How do I do the >>>>>>>> manual edits without this button. I do see a voxel edit button. >>>>>>>> >>>>>>>> https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/PialEdits_freeview >>>>>>>> >>>>>>>> <https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/PialEdits_freeview> >>>>>>>> >>>>>>>> FsTutorial/PialEdits_freeview - Free Surfer Wiki >>>>>>>> <https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/PialEdits_freeview> >>>>>>>> surfer.nmr.mgh.harvard.edu >>>>>>>> top | previous Correcting Pial Surfaces. To follow this exercise >>>>>>>> exactly be sure you've downloaded the tutorial data set before you >>>>>>>> begin. If you choose not to ... >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> ------------------------------------------------------------------------ >>>>>>>> *From:* freesurfer-boun...@nmr.mgh.harvard.edu >>>>>>>> <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas Greve >>>>>>>> <gr...@nmr.mgh.harvard.edu> >>>>>>>> *Sent:* Monday, May 2, 2016 1:29 PM >>>>>>>> *To:* freesurfer@nmr.mgh.harvard.edu >>>>>>>> *Subject:* Re: [Freesurfer] no recon button >>>>>>>> freeview does not have a recon button. You have to run recon-all from >>>>>>>> the command line. >>>>>>>> >>>>>>>>> On 5/2/16 12:14 PM, Burke,Sarah E wrote: >>>>>>>>> Hello, >>>>>>>>> >>>>>>>>> >>>>>>>>> I searched the mail list and saw that others have had this problem, >>>>>>>>> but I see no answers to their queries. I have version 1.0 >>>>>>>>> (5/13/2013) of Freeview for Linux. I have no recon button. What >>>>>>>>> should I do? >>>>>>>>> >>>>>>>>> >>>>>>>>> Thank you >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> _______________________________________________ >>>>>>>>> Freesurfer mailing list >>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>> >>>>>>>> _______________________________________________ >>>>>>>> Freesurfer mailing list >>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Freesurfer mailing list >>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>> -- >>>>>> Douglas N. Greve, Ph.D. >>>>>> MGH-NMR Center >>>>>> gr...@nmr.mgh.harvard.edu >>>>>> Phone Number: 617-724-2358 >>>>>> Fax: 617-726-7422 >>>>>> >>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>> >>>>>> >>>>>> The information in this e-mail is intended only for the person to whom >>>>>> it is >>>>>> addressed. If you believe this e-mail was sent to you in error and the >>>>>> e-mail >>>>>> contains patient information, please contact the Partners Compliance >>>>>> HelpLine at >>>>>> http://www.partners.org/complianceline . If the e-mail was sent to you >>>>>> in error >>>>>> but does not contain patient information, please contact the sender and >>>>>> properly >>>>>> dispose of the e-mail. >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> -- >>>>> Douglas N. Greve, Ph.D. >>>>> MGH-NMR Center >>>>> gr...@nmr.mgh.harvard.edu >>>>> Phone Number: 617-724-2358 >>>>> Fax: 617-726-7422 >>>>> >>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <5.1_edits.png> > <dev_edits.png> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
