Thank you. I have uploaded the files (lh.inflated_TP_1_4.nofix and lh.inflated_TP_2_4.nofix).
What should I do as a next step? Cheers Katarina Trojacanec, M.Sc. Teaching and research assistant Faculty of Computer Science and Engineering Ss. Cyril and Methodius University - Skopje, Republic of Macedonia ________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Bruce Fischl <fis...@nmr.mgh.harvard.edu> Sent: Wednesday, May 4, 2016 2:35 PM To: Freesurfer support list Subject: Re: [Freesurfer] Correcting defect sure. Or you can load the ?h.inflated.nofix and look at it - it should be obvious if there is a huge defect (you can also load the file ?h.defect_labels as an overlay on that surface and it will show you the segmentation of the defects) cheers Bruce On Wed, 4 May 2016, Katarina Trojacanec wrote: > > Dear FreeSurfer Team, > > > I have been trying to run creation of template with FreeSurfer. However, > for two cases for one patient (case 1: template based on TP1 and TP4, case > 2: template based on TP2 and TP4), the correcting defect step is running > too long. According to the information in the mail archive, the defects are > probably too big, and that is the reason for the long processing. > > > May I send you via ftp the subjects directories so you can help me to > proceed with this subject, because I am not able to figure out and correct > the problem? Should I send you the base directories in their current state > or the cross-sectionally processed time points as well? > > > Best Regards, > > > Katarina Trojacanec, M.Sc. > Teaching and research assistant > > Faculty of Computer Science and Engineering > Ss. Cyril and Methodius University - Skopje, Republic of Macedonia > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
