can you send us the recon-all.log? I don't see an obvious reason why it wouldn't have worked On Tue, 19 Apr 2016, dgw wrote:
> Just to follow up, I have tried several different options with > recon-all to get the white matter edits to stick on this participant, > and it doesn't seem to be working: > > re-editing wm.mgz and running recon-all -autorecon2-wm > re-editing wm.mgz and running recon-all -make all > > I can't seem to get any appreciable change in the white matter > surface. I have attached a screenshot, for an example. > > hth > d > > > On Mon, Apr 18, 2016 at 10:30 AM, dgw <dgwake...@gmail.com> wrote: >> Hi, >> >> I recently edited a brain with a gyral cyst, carefully filling the >> cyst with white matter in the wm.mgz. Unfortunately after running: >> /usr/local/freesurfer/stable5_3_0/bin/recon-all >> -autorecon2-wm -autorecon3 -subjid nmr01002 -FLAIRpial -openmp 8 >> >> none of the edits were incorporated. >> >> Is the FLAIRpial flag incompatible with autorecon2-wm? >> >> Is there some other misake? >> >> I followed this guide >> https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/WhiteMatterEdits_freeview >> >> Thanks, >> Dan > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
