How did you edit the registration? Does it work with the unedited version? On 04/13/2016 10:21 AM, Elijah Mak wrote: > Hi Doug, > > One more question about feeding the -reg to mri_vol2surf, please. > > I am specifying the registration .lta because I have made edits to it, > > mri_vol2surf --src FS6_24551_MPRAGE_Neuro.nii/pet/pet2free_fsl.mgz > --out FS6_24551_MPRAGE_Neuro.nii/surf/lh.PETSurfce.mgh --projfrac 0.5 > --hemi lh --reg FS6_24551_MPRAGE_Neuro.nii/pet/pet2free_fsl.mgz.lta > --trgsubject fsaverage > > I get the following error: > > srcvol = FS6_24551_MPRAGE_Neuro.nii/pet/pet2free_fsl.mgz > > srcreg = FS6_24551_MPRAGE_Neuro.nii/pet/pet2free_fsl.mgz.lta > > srcregold = 0 > > srcwarp unspecified > > surf = white > > hemi = lh > > trgsubject = fsaverage > > surfreg = sphere.reg > > ProjFrac = 0.5 > > thickness = thickness > > reshape = 0 > > interp = nearest > > float2int = round > > GetProjMax = 0 > > INFO: float2int code = 0 > > Done loading volume > > Input reg is LTA > > > > type = 0 # LINEAR_VOX_TO_VOX > > nxforms = 1 > > mean = 0.0000 0.0000 0.0000 > > sigma = 1.0000 > > 1 4 4 > > 9.996573328971863e-01 -2.963314531370997e-03 2.600867860019207e-02 > -2.005096435546875e+00 > > 1.517883041479706e-18 9.935718178749084e-01 1.132032126188278e-01 > -2.398274230957031e+01 > > -2.617694810032845e-02 -1.131644248962402e-01 9.932314157485962e-01 > 1.568508148193359e+01 > > 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 > 1.000000000000000e+00 > > src volume info > > valid = 1 # volume info valid > > filename = > /Users/MacPro/Documents/NIMROD_DTI/FS6_24551_MPRAGE_Neuro.nii/pet/pet2free_fsl.mgz > > volume = 256 256 256 > > voxelsize = 1.000000000000000e+00 1.000000000000000e+00 > 1.000000000000000e+00 > > xras = -1.000000000000000e+00 -2.328306436538696e-10 > 0.000000000000000e+00 > > yras = -1.862645149230957e-09 -2.991509973071516e-08 > -1.000000000000000e+00 > > zras = 0.000000000000000e+00 1.000000000000000e+00 1.091393642127514e-10 > > cras = 1.471549987792969e+00 -1.038517761230469e+01 > 1.970146179199219e+01 > > dst volume info > > valid = 1 # volume info valid > > filename = > /Users/MacPro/Documents/NIMROD_DTI/FS6_24551_MPRAGE_Neuro.nii/pet/pet2free_fsl.mgz > > volume = 256 256 256 > > voxelsize = 1.000000000000000e+00 1.000000000000000e+00 > 1.000000000000000e+00 > > xras = -1.000000000000000e+00 -2.328306436538696e-10 > 0.000000000000000e+00 > > yras = -1.862645149230957e-09 -2.991509973071516e-08 > -1.000000000000000e+00 > > zras = 0.000000000000000e+00 1.000000000000000e+00 1.091393642127514e-10 > > cras = 1.471549987792969e+00 -1.038517761230469e+01 > 1.970146179199219e+01 > > fscale 0.150000 > > ERROR: source volume is neither source nor target of the registration > > This error does not appear when I use --regheader though? > > Best Wishes, > > Elijah > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
