What is your source data? It looks like you have two time points per subject, but the names of "offset" and "slope" suggest some preprocessing?
Input hc001-lRsk_offset hc001 1 0 0 Input hc001-lRsk_slope hc001 0 0 0 Input hc001-mRsk_offset hc001 0 1 0 Input hc001-mRsk_slope hc001 0 0 0 Input hc001-hRsk_offset hc001 0 0 1 Input hc001-hRsk_slope hc001 0 0 0 On 04/11/2016 10:09 AM, Afzal, Afsana wrote: > Hi Doug, > > I've attached the fsgd file and the contrast matrix file. Thanks for your > help! > > - Afsana > > ______________________________ > Afsana Afzal > Clinical Research Coordinator > Massachusetts General Hospital > Division of Neurotherapeutics > Department of Psychiatry: Neurosciences > 149 13th St, Room 2612 > Charlestown, MA 02129 > Phone: 617-643-5129 > Fax: 617-726-4078 > > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Friday, April 08, 2016 12:07 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Group level analysis: Specifying contrasts > > I don't know what you mean, can you just send the header of the fsgd > file and the contrast matrix? > > On 04/04/2016 11:20 AM, Afzal, Afsana wrote: >> Hi, >> >> I want to perform a linear regression for a task with 3 different risk >> conditions (low, medium, high) with the following linear trend: low = >> 1, medium = 2, high = 3. >> >> Right now I'm specifying the above weighted under each risk condition >> in my contrast matrix. Is this the correct approach? I want to make >> sure I am calculating a regression and not a weighted average. >> >> Thank you for your help, >> >> Afsana >> >> >> ______________________________ >> *Afsana Afzal* >> Clinical Research Coordinator >> Massachusetts General Hospital >> Division of Neurotherapeutics >> Department of Psychiatry: Neurosciences >> 149 13th St, Room 2612 >> Charlestown, MA 02129 >> Phone: 617-643-5129 >> Fax: 617-726-4078 >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
