Hi Sampada

could you include our previous corresponance in your emails so I can keep track of what we were talking about? If your slice thickness is really 6.5mm (or slice thickness + gap) then that is probably the source of your problems. You need something much closer to isotropic

cheers
Bruce
On Wed, 30 Mar 2016, Dr Sampada Sinha wrote:

Hello Bruce,

Thanks for following it up. ​Sorry for tardy response. I am at the mercy of
power supply and Internet connectivity here. ​The details of scans are
enclosed as a snapshots. Peculiar thing is that we have processed about
23-24 participants' sMRI having similar scanning parameters and their
surface reconstruction is okay. One thing I would like to ask, if I may (?)
is that:​
why am I seeing this problem in this particular participant and why not in
other ones that have been processed?​ All participants so far pre-processed
with recon-all have similar sMRI image protocol.​

Appreciate all your help!

Thanks and kind regards,

Sampada




--
Sampada
Pre-doctoral student
Department of Geriatric Mental Health (DGMH)
King George Medical University
Lucknow-226003
India









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