Dear. Freesurfer experts. Hi. How are you?
I'd appreciate it a lot if you can help me with this problem. I'm trying to check the ROI (.nii) after creating it by using mri_label2vol command. I used the command: mri_label2vol --label $SUBJECTS_DIR/$SUBJECT/label/lh.v1vt.label --label $SUBJECTS_DIR/$SUBJECT/label/lh.v1dt.label --temp $DATA_DIR/$SUBJECT/bold_retino/025/fmcpr.nii.gz --reg $DATA_DIR/$SUBJECT/bold_retino/025/register.dof6.dat --o $DATA_DIR/$SUBJECT/roimask/test.nii tkmedit -f $SUBJECTS_DIR/$SUBJECT/mri/norm.mgz -overlay $DATA_DIR/$SUBJECT/roimask/test.nii -overlay-reg $DATA_DIR/$SUBJECT/bold_retino/025/register.dof6.dat -fthresh 0.01 However, this tkmedit command looks for test.dat file instead of test.nii and does not show ROI. Could you please tell me what's going wrong? Thank you! Best, Ji Won
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
