breaksw breaksw
end end while ( $#argv != 0 ) while ( 5 != 0 ) set flag = $argv[1] ; shift ; set flag = --i shift switch ( $flag ) switch ( --i ) if ( $#argv < 1 ) goto arg1err ; if ( 4 < 1 ) goto arg1err set InputVol = "$argv[1]" ; shift ; set InputVol = DTI.nii.gz shift if ( ! -e "$InputVol" ) then if ( ! -e DTI.nii.gz ) then if ( ! -r "$InputVol" ) then if ( ! -r DTI.nii.gz ) then set InVolDir = `dirname "$InputVol"` ; set InVolDir = `dirname "$InputVol"` dirname DTI.nii.gz set InVolBase = `basename "$InputVol"` ; set InVolBase = `basename "$InputVol"` basename DTI.nii.gz pushd $InVolDir > /dev/null pushd . set InVolDir = `pwd` ; set InVolDir = `pwd` pwd popd > /dev/null popd set InputVol = "$InVolDir/$InVolBase" ; set InputVol = /Users/jasminalves/Desktop/data/40/DTI.nii.gz set DoConvertInput = 1 ; set DoConvertInput = 1 breaksw breaksw end end while ( $#argv != 0 ) while ( 3 != 0 ) set flag = $argv[1] ; shift ; set flag = --s shift switch ( $flag ) switch ( --s ) if ( $#argv < 1 ) goto arg1err ; if ( 2 < 1 ) goto arg1err set subject = $argv[1] ; shift ; set subject = 40 shift set subject = `basename $subject` ; set subject = `basename $subject` basename 40 breaksw breaksw end end while ( $#argv != 0 ) while ( 1 != 0 ) set flag = $argv[1] ; shift ; set flag = --o shift switch ( $flag ) switch ( --o ) if ( $#argv < 1 ) goto arg1err ; if ( 0 < 1 ) goto arg1err goto arg1err echo "ERROR: flag $flag requires one argument" echo ERROR: flag --o requires one argument ERROR: flag --o requires one argument exit 1 exit 1 The second part of the command "/Users/jasminalves/Desktop/data/FREESURFER/40 |& tee dng.log" won't work, but I sent you the output from the first part. On Wed, Mar 16, 2016 at 8:50 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > > No, I mean that when the command is run, it will print a lot of text to > the screen. I want to know what that text is. You can run the following > command and send me the dng.log file > > dt_recon --debug --i DTI.nii.gz --s 40 --o > /Users/jasminalves/Desktop/data/FREESURFER/40 |& tee dng.log > > > > > > On 03/16/2016 11:35 AM, Jasmin Alves wrote: > > Do you mean, what ends up happening? I have attached a screen shot of > > what files are made. > > > > > > > > On Wed, Mar 16, 2016 at 7:31 AM, Douglas Greve > > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > > > Can you send me what dt_recon prints to the screen when your run > > the command below? > > > > > > On 3/15/16 11:40 PM, Jasmin Alves wrote: > >> > >> Jasmins-MacBook-Pro:40 jasminalves$ dt_recon --i DTI.nii.gz --s > >> 40 --o /Users/jasminalves/Desktop/data/FREESURFER/40 > >> > >> INFO: SUBJECTS_DIR is /Users/jasminalves/Desktop/data/FREESURFER/ > >> > >> dt_recon logfile > >> > >> Tue Mar 15 20:37:35 PDT 2016 > >> > >> VERSION $Id: dt_recon,v 1.15 2011/01/25 21:53:04 greve Exp $ > >> > >> setenv SUBJECTS_DIR /Users/jasminalves/Desktop/data/FREESURFER/ > >> > >> cd /Users/jasminalves/Desktop/data/40 > >> > >> /Applications/freesurfer/bin/dt_recon --i DTI.nii.gz --s 40 --o > >> /Users/jasminalves/Desktop/data/FREESURFER/40 > >> > >> Jasmins-MacBook-Pro.local > >> > >> jasminalves > >> > >> /Applications/Utilities/fsl/bin/eddy_correct > >> > >> ECRefTP 0 > >> > >> #@#------------------------------- > >> > >> Converting input > >> > >> Tue Mar 15 20:37:35 PDT 2016 > >> > >> cd /Users/jasminalves/Desktop/data/40 > >> > >> mri_convert /Users/jasminalves/Desktop/data/40/DTI.nii.gz > >> /Users/jasminalves/Desktop/data/FREESURFER/40/dwi.nii > >> > >> mri_convert /Users/jasminalves/Desktop/data/40/DTI.nii.gz > >> /Users/jasminalves/Desktop/data/FREESURFER/40/dwi.nii > >> > >> $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ > >> > >> reading from /Users/jasminalves/Desktop/data/40/DTI.nii.gz... > >> > >> TR=8100.00, TE=0.00, TI=0.00, flip angle=0.00 > >> > >> i_ras = (-0.999929, 0.0116015, -0.00282784) > >> > >> j_ras = (0.0115984, 0.999932, 0.00109136) > >> > >> k_ras = (-0.00284031, -0.00105848, 0.999995) > >> > >> writing to /Users/jasminalves/Desktop/data/FREESURFER/40/dwi.nii... > >> > >> cd /Users/jasminalves/Desktop/data/40 > >> > >> mri_probedicom --i /Users/jasminalves/Desktop/data/40/DTI.nii.gz > >> > >> Jasmins-MacBook-Pro:40 jasminalves$ > >> > >> > >> > >> On Tue, Mar 15, 2016 at 12:34 PM, Douglas N Greve > >> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> > wrote: > >> > >> Can you send the full terminal output from when you run > >> dt_recon with > >> the nifti as input? > >> > >> On 03/15/2016 03:07 PM, Jasmin Alves wrote: > >> > How was DTI.nii.gz created? DTI.nii.gz was converted from > >> the raw > >> > dicom data using dcm2nii. > >> > > >> > Response for: "What happens if you run mri_info DTI.nii.gz" > >> > > >> > Volume information for DTI.nii.gz > >> > > >> > type: nii > >> > > >> > dimensions: 128 x 128 x 70 x 65 > >> > > >> > voxel sizes: 2.0000, 2.0000, 2.0000 > >> > > >> > type: FLOAT (3) > >> > > >> > fov: 256.000 > >> > > >> > dof: 0 > >> > > >> > xstart: -128.0, xend: 128.0 > >> > > >> > ystart: -128.0, yend: 128.0 > >> > > >> > zstart: -70.0, zend: 70.0 > >> > > >> > TR: 8100.00 msec, TE: 0.00 msec, TI: 0.00 msec, > >> flip > >> > angle: 0.00 degrees > >> > > >> > nframes: 65 > >> > > >> > PhEncDir: UNKNOWN > >> > > >> > ras xform present > >> > > >> > xform info: x_r = -0.9999, y_r = 0.0116, z_r = > >> -0.0028, c_r = > >> > -0.4290 > >> > > >> > : x_a = 0.0116, y_a = 0.9999, z_a = > >> -0.0011, c_a = > >> > 4.1548 > >> > > >> > : x_s = -0.0028, y_s = 0.0011, z_s = > >> 1.0000, c_s = > >> > 30.9622 > >> > > >> > Orientation : LAS > >> > > >> > Primary Slice Direction: axial > >> > > >> > voxel to ras transform: > >> > > >> > -1.9999 0.0232 -0.0057 126.2761 > >> > > >> > 0.0232 1.9999 -0.0021 -125.2474 > >> > > >> > -0.0057 0.0022 2.0000 -38.8153 > >> > > >> > 0.0000 0.0000 0.0000 1.0000 > >> > > >> > voxel-to-ras determinant -8 > >> > > >> > ras to voxel transform: > >> > > >> > -0.5000 0.0058 -0.0014 63.8052 > >> > > >> > 0.0058 0.5000 0.0005 61.9083 > >> > > >> > -0.0014 -0.0005 0.5000 19.5206 > >> > > >> > 0.0000 0.0000 0.0000 1.0000 > >> > > >> > > >> > On Tue, Mar 15, 2016 at 11:25 AM, Douglas N Greve > >> > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > >> <mailto:gr...@nmr.mgh.harvard.edu > >> <mailto:gr...@nmr.mgh.harvard.edu>>> wrote: > >> > > >> > > >> > How was DTI.nii.gz created? What happens if you run > >> > mri_info DTI.nii.gz > >> > > >> > If the DICOM is a siemens dicom but has been stripped > >> of special > >> > siemens > >> > info, then we cannot unpack it > >> > > >> > > >> > On 03/15/2016 02:02 PM, Jasmin Alves wrote: > >> > > > >> > > Still get the same error: > >> > > > >> > > WARNING: file > >> /Users/jasminalves/Desktop/data/40/00010001 does not > >> > > contain a Siemens ASCII header > >> > > > >> > > has this file been anonymized? > >> > > > >> > > ERROR: cannot unpack mosiacs without ASCII header > >> > > > >> > > > >> > > The error I get when running in nifti format is > >> actually found > >> > in the > >> > > log file. > >> > > > >> > > ERROR: /Users/jasminalves/Desktop/data/40/DTI.nii.gz > >> is not a dicom > >> > > file or some other problem > >> > > > >> > > > >> > > > >> > > > >> > > On Tue, Mar 15, 2016 at 9:01 AM, Douglas N Greve > >> > > <gr...@nmr.mgh.harvard.edu > >> <mailto:gr...@nmr.mgh.harvard.edu> > >> <mailto:gr...@nmr.mgh.harvard.edu > >> <mailto:gr...@nmr.mgh.harvard.edu>> > >> > <mailto:gr...@nmr.mgh.harvard.edu > >> <mailto:gr...@nmr.mgh.harvard.edu> > >> > <mailto:gr...@nmr.mgh.harvard.edu > >> <mailto:gr...@nmr.mgh.harvard.edu>>>> wrote: > >> > > > >> > > if you run > >> > > mri_convert 00010001 deleteme.nii > >> > > what happens? > >> > > > >> > > what is the error when running with nifti? > >> > > > >> > > > >> > > On 03/14/2016 05:59 PM, Jasmin Alves wrote: > >> > > > > >> > > > Dear Freesurfer experts, > >> > > > > >> > > > FREESURFER_HOME: /Applications/freesurfer > >> > > > > >> > > > Build stamp: > >> freesurfer-Darwin-lion-stable-pub-v5.3.0 > >> > > > > >> > > > Kernel info: Darwin 14.5.0 x86_64 > >> > > > > >> > > > > >> > > > I received the following error while running > >> the dt_recon --i > >> > > 00010001 > >> > > > --s 40 --o > >> /Users/jasminalves/Desktop/data/FREESURFER/40. > >> > > > > >> > > > The participant is 40. > >> > > > > >> > > > And I received the following error: > >> > > > > >> > > > WARNING: file > >> /Users/jasminalves/Desktop/data/40/00010001 > >> > does not > >> > > > contain a Siemens ASCII header has this file > >> been anonymized? > >> > > > > >> > > > ERROR: cannot unpack mosiacs without ASCII header > >> > > > > >> > > > > >> > > > I did notice on previous threads this is a > >> common error > >> > that occurs, > >> > > > but the files I have were directly exported > >> from our > >> > siemens scanner > >> > > > via Osirix. I also tried running dt_recon using > >> nifti > >> > format but > >> > > that > >> > > > resulted in an error as well. Is there anything > >> else I can do? > >> > > > > >> > > > Thanks, > >> > > > > >> > > > Jasmin > >> > > > > >> > > > > >> > > > -- > >> > > > Jasmin Alves > >> > > > Predoctoral Student > >> > > > Medical Biology Graduate Program > >> > > > University of Southern California > >> > > > jal...@usc.edu <mailto:jal...@usc.edu> > >> <mailto:jal...@usc.edu <mailto:jal...@usc.edu>> > >> > <mailto:jal...@usc.edu <mailto:jal...@usc.edu> > >> <mailto:jal...@usc.edu <mailto:jal...@usc.edu>>> > >> > <mailto:jal...@usc.edu <mailto:jal...@usc.edu> > >> <mailto:jal...@usc.edu <mailto:jal...@usc.edu>> > >> > > <mailto:jal...@usc.edu <mailto:jal...@usc.edu> > >> <mailto:jal...@usc.edu <mailto:jal...@usc.edu>>>> > >> > > > > >> > > > > >> > > > > >> > > > _______________________________________________ > >> > > > Freesurfer mailing list > >> > > > Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> > <mailto:Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> > > <mailto:Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> > <mailto:Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu>>> > >> > > > > >> > > > >> > > >> > https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=v9tFPBwUhooWQdua1MFl4G-WkZdqs5b-a3SFZRYSRDs&s=369GPCb6aThxDDKHEPitpYUvNATIrFBISf_vC_ldmDs&e= > >> > > > >> > > -- > >> > > Douglas N. Greve, Ph.D. > >> > > MGH-NMR Center > >> > > gr...@nmr.mgh.harvard.edu > >> <mailto:gr...@nmr.mgh.harvard.edu> > >> <mailto:gr...@nmr.mgh.harvard.edu > >> <mailto:gr...@nmr.mgh.harvard.edu>> > >> > <mailto:gr...@nmr.mgh.harvard.edu > >> <mailto:gr...@nmr.mgh.harvard.edu> > >> <mailto:gr...@nmr.mgh.harvard.edu > >> <mailto:gr...@nmr.mgh.harvard.edu>>> > >> > > Phone Number:617-724-2358 <tel:617-724-2358> <tel: > 617-724-2358 > >> <tel:617-724-2358>> > >> > <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358 > >> <tel:617-724-2358>>> > >> > > Fax: 617-726-7422 <tel:617-726-7422> > >> <tel:617-726-7422 <tel:617-726-7422>> <tel:617-726-7422 > >> <tel:617-726-7422> > >> > <tel:617-726-7422 <tel:617-726-7422>>> > >> > > > >> > > Bugs: > >> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >> < > https://urldefense.proofpoint.com/v2/url?u=http-3A__surfer.nmr.mgh.harvard.edu_fswiki_BugReporting&d=CwMD-g&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=kUuMsvGkF90j7MrnR1WzFM-p2ZBt4XLVQjd46fokEaU&s=MK31sF-RJdk6uPRbA3WqaZvEnAO7Om7G1iX60nDdKDU&e= > > > >> > > >> < > https://urldefense.proofpoint.com/v2/url?u=http-3A__surfer.nmr.mgh.harvard.edu_fswiki_BugReporting&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=o6-ydWWvsWf-fSm5NmMZmldXpXEjEg3duz1vViy6NAc&s=JEMNVqaCWFyhIBYx595b2hHndKvujFMwSozkDcSGbIU&e= > >> > > >> > > > >> > > >> < > https://urldefense.proofpoint.com/v2/url?u=http-3A__surfer.nmr.mgh.harvard.edu_fswiki_BugReporting&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=Dg3E3_3nDK398YRIg5fpyFNMc_O6RObwIezN3fq92AQ&s=GpEEtkD1BnMJzWOlXkecPjAGlZyRbfpUD2D7FRdXC7o&e= > >> > > > >> > > FileDrop: > >> > > > >> > > >> > https://urldefense.proofpoint.com/v2/url?u=https-3A__gate.nmr.mgh.harvard.edu_filedrop2&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=v9tFPBwUhooWQdua1MFl4G-WkZdqs5b-a3SFZRYSRDs&s=K5-xLMTkmvO4akwQ1yNQhCyFkQ3yeGkg4bIrAd6xArI&e= > >> > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > >> < > https://urldefense.proofpoint.com/v2/url?u=http-3A__www.nmr.mgh.harvard.edu_facility_filedrop_index.html&d=CwMD-g&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=kUuMsvGkF90j7MrnR1WzFM-p2ZBt4XLVQjd46fokEaU&s=RSVB1NkchYqjnISeOuHCIb2NZhwZCjamwvm14kpP5TE&e= > > > >> > > >> < > https://urldefense.proofpoint.com/v2/url?u=http-3A__www.nmr.mgh.harvard.edu_facility_filedrop_index.html&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=o6-ydWWvsWf-fSm5NmMZmldXpXEjEg3duz1vViy6NAc&s=0iHNzzA_YcOmdUVFE4ZkioQ3jzIzzE4UGUhUbOdZ2Vo&e= > >> > > >> > > > >> > > >> < > https://urldefense.proofpoint.com/v2/url?u=http-3A__www.nmr.mgh.harvard.edu_facility_filedrop_index.html&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=Dg3E3_3nDK398YRIg5fpyFNMc_O6RObwIezN3fq92AQ&s=hwwSX9tQxQeWZq4mK8Rpb7vYFBqUftnwxx3egrwmBdM&e= > >> > > > >> > > Outgoing: > >> > > > >> > > >> > https://urldefense.proofpoint.com/v2/url?u=ftp-3A__surfer.nmr.mgh.harvard.edu_transfer_outgoing_flat_greve_&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=v9tFPBwUhooWQdua1MFl4G-WkZdqs5b-a3SFZRYSRDs&s=XP0Fok4OAHAC7DYzCOyUrPu9PLDR_RULGfbnE8c0hNs&e= > >> > > > >> > > _______________________________________________ > >> > > Freesurfer mailing list > >> > > Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> > <mailto:Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> > <mailto:Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> > <mailto:Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu>>> > >> > > >> > > https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=v9tFPBwUhooWQdua1MFl4G-WkZdqs5b-a3SFZRYSRDs&s=369GPCb6aThxDDKHEPitpYUvNATIrFBISf_vC_ldmDs&e= > >> > > > >> > > > >> > > The information in this e-mail is intended only > >> for the > >> > person to > >> > > whom it is > >> > > addressed. If you believe this e-mail was sent to > >> you in > >> > error and > >> > > the e-mail > >> > > contains patient information, please contact the > >> Partners > >> > > Compliance HelpLine at > >> > > > >> > > >> > https://urldefense.proofpoint.com/v2/url?u=http-3A__www.partners.org_complianceline&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=v9tFPBwUhooWQdua1MFl4G-WkZdqs5b-a3SFZRYSRDs&s=kr8DioqB8ZA30rJ-OJWi601znNchJg-CCjnpQKvHYhI&e= > >> > > . If the e-mail was sent to you in error > >> > > but does not contain patient information, please > >> contact the > >> > > sender and properly > >> > > dispose of the e-mail. > >> > > > >> > > > >> > > > >> > > > >> > > -- > >> > > Jasmin Alves > >> > > Predoctoral Student > >> > > Medical Biology Graduate Program > >> > > University of Southern California > >> > >jal...@usc.edu <mailto:jal...@usc.edu> <mailto: > jal...@usc.edu > >> <mailto:jal...@usc.edu>> <mailto:jal...@usc.edu > >> <mailto:jal...@usc.edu> > >> > <mailto:jal...@usc.edu <mailto:jal...@usc.edu>>> > >> > > > >> > > > >> > > > >> > > _______________________________________________ > >> > > Freesurfer mailing list > >> > > Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> > <mailto:Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> > > > >> > > https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=Dg3E3_3nDK398YRIg5fpyFNMc_O6RObwIezN3fq92AQ&s=CqAmblGQbrSHiiR2HnmriniLIefT883nzWX7ij98H2M&e= > >> > > >> > -- > >> > Douglas N. Greve, Ph.D. > >> > MGH-NMR Center > >> >gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > >> <mailto:gr...@nmr.mgh.harvard.edu > >> <mailto:gr...@nmr.mgh.harvard.edu>> > >> > Phone Number: 617-724-2358 <tel:617-724-2358> > >> <tel:617-724-2358 <tel:617-724-2358>> > >> > Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422 > >> <tel:617-726-7422>> > >> > > >> > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >> < > https://urldefense.proofpoint.com/v2/url?u=http-3A__surfer.nmr.mgh.harvard.edu_fswiki_BugReporting&d=CwMD-g&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=kUuMsvGkF90j7MrnR1WzFM-p2ZBt4XLVQjd46fokEaU&s=MK31sF-RJdk6uPRbA3WqaZvEnAO7Om7G1iX60nDdKDU&e= > > > >> > > >> < > https://urldefense.proofpoint.com/v2/url?u=http-3A__surfer.nmr.mgh.harvard.edu_fswiki_BugReporting&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=o6-ydWWvsWf-fSm5NmMZmldXpXEjEg3duz1vViy6NAc&s=JEMNVqaCWFyhIBYx595b2hHndKvujFMwSozkDcSGbIU&e= > >> > > >> > FileDrop: > >> > > >> > https://urldefense.proofpoint.com/v2/url?u=https-3A__gate.nmr.mgh.harvard.edu_filedrop2&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=Dg3E3_3nDK398YRIg5fpyFNMc_O6RObwIezN3fq92AQ&s=_JLzMZF53oLGA-oQwL-7Z2q1LachFF3-2TIEkkTGdcc&e= > >> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > >> < > https://urldefense.proofpoint.com/v2/url?u=http-3A__www.nmr.mgh.harvard.edu_facility_filedrop_index.html&d=CwMD-g&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=kUuMsvGkF90j7MrnR1WzFM-p2ZBt4XLVQjd46fokEaU&s=RSVB1NkchYqjnISeOuHCIb2NZhwZCjamwvm14kpP5TE&e= > > > >> > > >> < > https://urldefense.proofpoint.com/v2/url?u=http-3A__www.nmr.mgh.harvard.edu_facility_filedrop_index.html&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=o6-ydWWvsWf-fSm5NmMZmldXpXEjEg3duz1vViy6NAc&s=0iHNzzA_YcOmdUVFE4ZkioQ3jzIzzE4UGUhUbOdZ2Vo&e= > >> > > >> > Outgoing: > >> > > >> > https://urldefense.proofpoint.com/v2/url?u=ftp-3A__surfer.nmr.mgh.harvard.edu_transfer_outgoing_flat_greve_&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=Dg3E3_3nDK398YRIg5fpyFNMc_O6RObwIezN3fq92AQ&s=JLD-nXWKsjEKCvgUh1sKRBa_OnTn05cFSq8QsAEegp8&e= > >> > > >> > _______________________________________________ > >> > Freesurfer mailing list > >> > Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> > > https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=Dg3E3_3nDK398YRIg5fpyFNMc_O6RObwIezN3fq92AQ&s=CqAmblGQbrSHiiR2HnmriniLIefT883nzWX7ij98H2M&e= > >> > > >> > > >> > The information in this e-mail is intended only for the > >> person to > >> > whom it is > >> > addressed. If you believe this e-mail was sent to you > >> in error and > >> > the e-mail > >> > contains patient information, please contact the Partners > >> > Compliance HelpLine at > >> > > >> > https://urldefense.proofpoint.com/v2/url?u=http-3A__www.partners.org_complianceline&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=Dg3E3_3nDK398YRIg5fpyFNMc_O6RObwIezN3fq92AQ&s=8mDIOhbTFEY_zJuCIowaFDgmQ2VVcBIkkgeCv1DGyfQ&e= > >> > . If the e-mail was sent to you in error > >> > but does not contain patient information, please > >> contact the > >> > sender and properly > >> > dispose of the e-mail. > >> > > >> > > >> > > >> > > >> > -- > >> > Jasmin Alves > >> > Predoctoral Student > >> > Medical Biology Graduate Program > >> > University of Southern California > >> >jal...@usc.edu <mailto:jal...@usc.edu> <mailto:jal...@usc.edu > >> <mailto:jal...@usc.edu>> > >> > > >> > > >> > > >> > _______________________________________________ > >> > Freesurfer mailing list > >> > Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> > > >> > https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=o6-ydWWvsWf-fSm5NmMZmldXpXEjEg3duz1vViy6NAc&s=QmXOcbmhxk50ab8-qFqSUJq79Xrd-iAPmWQlf_34OVo&e= > >> > >> -- > >> Douglas N. Greve, Ph.D. > >> MGH-NMR Center > >> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > >> Phone Number: 617-724-2358 <tel:617-724-2358> > >> Fax: 617-726-7422 <tel:617-726-7422> > >> > >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >> < > https://urldefense.proofpoint.com/v2/url?u=http-3A__surfer.nmr.mgh.harvard.edu_fswiki_BugReporting&d=CwMD-g&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=kUuMsvGkF90j7MrnR1WzFM-p2ZBt4XLVQjd46fokEaU&s=MK31sF-RJdk6uPRbA3WqaZvEnAO7Om7G1iX60nDdKDU&e= > > > >> FileDrop: > >> > https://urldefense.proofpoint.com/v2/url?u=https-3A__gate.nmr.mgh.harvard.edu_filedrop2&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=o6-ydWWvsWf-fSm5NmMZmldXpXEjEg3duz1vViy6NAc&s=bELNK7f9QHMufVuMX2ijfEBXSpDDdKM8vNr0Jsb-Y5M&e= > >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html > >> < > https://urldefense.proofpoint.com/v2/url?u=http-3A__www.nmr.mgh.harvard.edu_facility_filedrop_index.html&d=CwMD-g&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=kUuMsvGkF90j7MrnR1WzFM-p2ZBt4XLVQjd46fokEaU&s=RSVB1NkchYqjnISeOuHCIb2NZhwZCjamwvm14kpP5TE&e= > > > >> Outgoing: > >> > https://urldefense.proofpoint.com/v2/url?u=ftp-3A__surfer.nmr.mgh.harvard.edu_transfer_outgoing_flat_greve_&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=o6-ydWWvsWf-fSm5NmMZmldXpXEjEg3duz1vViy6NAc&s=-5VhrwXWwPpKox8-jmZl_1_Ucv9MQtpYXaGlDDWtkoo&e= > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> > https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=o6-ydWWvsWf-fSm5NmMZmldXpXEjEg3duz1vViy6NAc&s=QmXOcbmhxk50ab8-qFqSUJq79Xrd-iAPmWQlf_34OVo&e= > >> > >> > >> The information in this e-mail is intended only for the > >> person to whom it is > >> addressed. If you believe this e-mail was sent to you in > >> error and the e-mail > >> contains patient information, please contact the Partners > >> Compliance HelpLine at > >> > https://urldefense.proofpoint.com/v2/url?u=http-3A__www.partners.org_complianceline&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=o6-ydWWvsWf-fSm5NmMZmldXpXEjEg3duz1vViy6NAc&s=OD8AVSmvHiAKa7hyRNMRoHXcW7kar7LqwI4rHhtPjSo&e= > >> . If the e-mail was sent to you in error > >> but does not contain patient information, please contact the > >> sender and properly > >> dispose of the e-mail. > >> > >> > >> > >> > >> -- > >> Jasmin Alves > >> Predoctoral Student > >> Medical Biology Graduate Program > >> University of Southern California > >> jal...@usc.edu <mailto:jal...@usc.edu> > >> > >> > >> > >> _______________________________________________ Freesurfer > >> mailing list Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> > https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=eQSHoAP4pcZSGqmfMdw3jfhexMmXoooSK-cfBt8beRE&s=WEokhaVpleyEtgA0ype9S_NQHSWEthfIMwRUAuZCo6I&e= > >> < > https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer&d=CwMD-g&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=kUuMsvGkF90j7MrnR1WzFM-p2ZBt4XLVQjd46fokEaU&s=H6NI99x-WlflQb2NzJ70ZN24kUzdOMoat4qJM9yvJPU&e= > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > > > https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=kUuMsvGkF90j7MrnR1WzFM-p2ZBt4XLVQjd46fokEaU&s=H6NI99x-WlflQb2NzJ70ZN24kUzdOMoat4qJM9yvJPU&e= > > > > > > The information in this e-mail is intended only for the person to > > whom it is > > addressed. If you believe this e-mail was sent to you in error and > > the e-mail > > contains patient information, please contact the Partners > > Compliance HelpLine at > > > https://urldefense.proofpoint.com/v2/url?u=http-3A__www.partners.org_complianceline&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=kUuMsvGkF90j7MrnR1WzFM-p2ZBt4XLVQjd46fokEaU&s=oYACqI7QKb5b2LHkR1y0vPH0gSrswPwceqLzKoaNa5g&e= > > . If the e-mail was sent to you in error > > but does not contain patient information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > > > > > > -- > > Jasmin Alves > > Predoctoral Student > > Medical Biology Graduate Program > > University of Southern California > > jal...@usc.edu <mailto:jal...@usc.edu> > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > > https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=eQSHoAP4pcZSGqmfMdw3jfhexMmXoooSK-cfBt8beRE&s=WEokhaVpleyEtgA0ype9S_NQHSWEthfIMwRUAuZCo6I&e= > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: > https://urldefense.proofpoint.com/v2/url?u=https-3A__gate.nmr.mgh.harvard.edu_filedrop2&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=eQSHoAP4pcZSGqmfMdw3jfhexMmXoooSK-cfBt8beRE&s=Z1nenseuAM5wjRh9HMu9FeoRXpa35orzmi8KuW1TXf0&e= > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: > https://urldefense.proofpoint.com/v2/url?u=ftp-3A__surfer.nmr.mgh.harvard.edu_transfer_outgoing_flat_greve_&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=eQSHoAP4pcZSGqmfMdw3jfhexMmXoooSK-cfBt8beRE&s=2GGcaDEb5zAEtp67KypSO-P1xMhDwF4wDdWRpcMQCUU&e= > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > > https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=eQSHoAP4pcZSGqmfMdw3jfhexMmXoooSK-cfBt8beRE&s=WEokhaVpleyEtgA0ype9S_NQHSWEthfIMwRUAuZCo6I&e= > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > > https://urldefense.proofpoint.com/v2/url?u=http-3A__www.partners.org_complianceline&d=CwIBAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=LH_W279i0KTyqa6rNRHLug&m=eQSHoAP4pcZSGqmfMdw3jfhexMmXoooSK-cfBt8beRE&s=bUrO7CND84PblHfZqBfj2_UaWRaUNkqD1DM3MbOeS94&e= > . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Jasmin Alves Predoctoral Student Medical Biology Graduate Program University of Southern California jal...@usc.edu
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
