Hi Uli that looks like a pretty dramatic failure for the surfaces even without considering the skull stripping problem. There are some expert options that can improve this a ton (e.g. mris_make_surfaces -wlo and such). If you would prefer you can upload the whole subject (tarred and gzipped ) and we can figure out better options for you cheers Bruce
On Wed, 16 Mar 2016, ulrike kaunzner wrote: > Hi, > We have problems with the skull of one subjects (please see below). We tried > adjusting the watershed parameters, but it still did not work. > What else can we do to change the surface? > > Thank you for your help! > > Best, > Uli > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
