the table file lh.aparc.thickness.table should be an ascii file. when you look at it with cat/more/less, what do you see? Can you send that table file?
On 03/07/2016 04:33 AM, Caroline Beelen wrote: > Hi Bruce, > > I'm a beginner in FS, so I just followed tutorial instructions for generating > the files carefully... > I generated it by typing in for instance (after recon-all process was done): > aparcstats2table --hemi lh --meas thickness --subjects A01_T1 A02_T1 etc... > A10_T1 --tablefile lh.aparc.thickness.table followed by the command: gnumeric > lh.aparc.thickness.table > > It's a linux pc with Ubuntu 12.04 LTS (processor intel core i7-3770 CPU @ > 3.4GHz x 8) > > Attached the log file (A09). > > Thank you very much! > > Greetings, Caroline > > -----Oorspronkelijk bericht----- > Van: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Namens Bruce Fischl > Verzonden: zondag 6 maart 2016 16:14 > Aan: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Onderwerp: Re: [Freesurfer] mean thickness > > Hi Caroline > > how did you generate the Gnumeric file? And what operating system/hardware > are you using? Also, please send us the recon-all.log for one of the subjects > that you see this happening > > cheers > Bruce > > On Fri, 4 Mar 2016, > Caroline Beelen wrote: > >> Dear Freesurfer team, >> >> >> >> Forgive me if this is a foolish question… >> >> >> >> I wanted to overlook cortical thickness, area and volume measures in >> Gnumeric file after recon-all (checking edits made). However, for >> several subjects I noticed that the values of mean thickness (final >> column) were calculated wrong, whereas this is not the case for their >> independent cortical thickness values. For instance, this happened to >> subject A09. I’m including the excel file to show the example. In the >> gnumeric file the number for this subject was depicted as 2/4964 >> instead of 2.4 etc.. What could have went wrong? >> >> >> >> Thank you for your answer in advance. >> >> >> >> Kind regards, Caroline >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
