In a simple word, my question is: under version 5.3.0, how can I specify funcstem (stem of functional volume)? I don't see any argument for that..
Thanks a lot. Best, Ji Won 2016-03-04 16:31 GMT-05:00 Ji Won Bang <kirsten...@gmail.com>: > Dear. Freesurfer experts. > > Hi. How are you? > > It might be very naive question. > > When using version 4.5.0 I used the command: > mkbrainmask-sess -s $SUBJECT -funcstem fmc -df sessdirfile -fsd bold_retino > > However under the version 5.3.0, mkbrainmask-sess does not have -funcstem. > > May I use -maskstem instead of -funcstem? > > If so, after that, I tried: > inorm-sess -s $SUBJECT -motioncor -funcstem fmc -df sessdirfile -fsd > bold_retino > > However, it complains that: > ERROR: cannot find > /home/jbang/Projects/replay/epi/replay06/bold_retino/masks/brain > You may need to run preproc-sess or mkbrainmask-sess to create a brain mask > > Could you please help? > > Thank you very much. > > Best, > Ji Won >
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