We have been able to establish that we are getting identical results when running recon-all -all on the same scan on different machine for the following: All .mgz files in directories mri, mri/orig, and mri/transforms, by comparing using mri_diff ... All of the .label and .annot files in directory label with md5sum ... Many of the files in directory surf with mris_diff.
We see differences in the BA*.annot files. We are still seeing difference in about 20 of the files in surf including [lr]h.inflated|orig|pial . We do see identity for lh.area.pial but not for lh.pial for instance. I've attached the output of our test routine. Your thoughts would be welcome on this pesky question. Best - Don
MRN_1_comet_diamond =?= MRN_1_mwt2_2_diamond ... ... directory mri ... aparc.a2009s+aseg.mgz ok aparc+aseg.mgz ok aseg.auto.mgz ok aseg.auto_noCCseg.mgz ok aseg.mgz ok brain.finalsurfs.mgz ok brainmask.auto.mgz ok brainmask.mgz ok brain.mgz ok ctrl_pts.mgz ok filled.mgz ok lh.ribbon.mgz ok norm.mgz ok nu.mgz ok nu_noneck.mgz ok orig.mgz ok orig_nu.mgz ok rawavg.mgz ok rh.ribbon.mgz ok ribbon.mgz ok T1.mgz ok wm.asegedit.mgz ok wm.mgz ok wmparc.mgz ok wm.seg.mgz ok ... directory mri/orig ... 001.mgz ok ... directory mri/transforms ... talairach.m3z.inv.x.mgz ok talairach.m3z.inv.y.mgz ok talairach.m3z.inv.z.mgz ok ... directory surf ... lh.area ok lh.area.mid ok lh.area.pial ok lh.avg_curv ok lh.curv ok lh.curv.pial ok lh.defect_borders ok lh.defect_chull ok lh.defect_labels ok lh.inflated Surfaces are not the same lh.inflated.H ok lh.inflated.K ok lh.inflated.nofix Surfaces are not the same lh.jacobian_white ok lh.orig Surfaces are not the same lh.orig.nofix Surfaces are not the same lh.pial Surfaces are not the same lh.qsphere.nofix Surfaces are not the same lh.smoothwm Surfaces are not the same lh.smoothwm.BE.crv ok lh.smoothwm.C.crv ok lh.smoothwm.FI.crv ok lh.smoothwm.H.crv ok lh.smoothwm.K1.crv ok lh.smoothwm.K2.crv ok lh.smoothwm.K.crv ok lh.smoothwm.nofix Surfaces are not the same lh.smoothwm.S.crv ok lh.sphere Surfaces are not the same lh.sphere.reg Surfaces are not the same lh.sulc ok lh.thickness ok lh.volume ok lh.w-g.pct.mgh ok lh.white Surfaces are not the same rh.area ok rh.area.mid ok rh.area.pial ok rh.avg_curv ok rh.curv ok rh.curv.pial ok rh.defect_borders ok rh.defect_chull ok rh.defect_labels ok rh.inflated Surfaces are not the same rh.inflated.H ok rh.inflated.K ok rh.inflated.nofix Surfaces are not the same rh.jacobian_white ok rh.orig Surfaces are not the same rh.orig.nofix Surfaces are not the same rh.pial Surfaces are not the same rh.qsphere.nofix Surfaces are not the same rh.smoothwm Surfaces are not the same rh.smoothwm.BE.crv ok rh.smoothwm.C.crv ok rh.smoothwm.FI.crv ok rh.smoothwm.H.crv ok rh.smoothwm.K1.crv ok rh.smoothwm.K2.crv ok rh.smoothwm.K.crv ok rh.smoothwm.nofix Surfaces are not the same rh.smoothwm.S.crv ok rh.sphere Surfaces are not the same rh.sphere.reg Surfaces are not the same rh.sulc ok rh.thickness ok rh.volume ok rh.w-g.pct.mgh ok rh.white Surfaces are not the same label files ok ... directory label/*.annot ... lh.aparc.a2009s.annot ok lh.aparc.annot ok lh.aparc.DKTatlas40.annot ok lh.BA.annot not ok ... 29d66ea8614488a56cb74e5cc5fe9470 != bc9507b6e0c7051b7e89554beb5d875f lh.BA.thresh.annot not ok ... 3b51e59d298014da180ee266d29805b8 != 576a09cfa118ed245b4103ca7f5f6753 rh.aparc.a2009s.annot ok rh.aparc.annot ok rh.aparc.DKTatlas40.annot ok rh.BA.annot not ok ... 7b1b4e8ea47f9fa366d8bff5079fe0c1 != a062a4b0494d64ac958894621161499d rh.BA.thresh.annot not ok ... af3a74b7f59a9924857d65678ca57fde != 7de02e148e7000f51ca9ef0d7816e834
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