Dear Bruce and Freesurfer, Yes, that is what I am saying! This what appears in the commandprompt when running the command:
input cache.th13.abs.sig.cluster.mgh frame 0 nErode3d 0 nErode2d 0 output thresholded.mgh Binarizing based on threshold min 1.3 max +infinity binval 1 binvalnot 0 Found 12485 values in range Counting number of voxels Found 12485 voxels in final mask mri_binarize done Yet nothing is visible when I open the thresholded surface in tksurfer. previous: what was the command line and screen output of the binarization? And are you saying that pre-binarization you have locations that are above threshold, but they are set to 0 anyway?
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