Hello Freesurfer, I am trying to learn freesurfer and ran into the following issues below running the recon -all command.
FREESURFER_HOME: /Applications/freesurfer Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0 Kernel info: Darwin 14.5.0 x86_64 1) joya 2) Jasmins-MacBook-Pro:subjects jasminalves$ recon-all -i T1_original_joya.nii -subject joya -all & 3) [1] 12300 Jasmins-MacBook-Pro:subjects jasminalves$ mkdir: /Applications/freesurfer/subjects/joya: Permission denied mkdir: /Applications/freesurfer/subjects/joya/scripts: Permission denied mkdir: /Applications/freesurfer/subjects/joya/scripts: Permission denied cp: /Applications/freesurfer/subjects/joya/scripts/build-stamp.txt: No such file or directory cat: /Applications/freesurfer/subjects/joya/scripts/build-stamp.txt: No such file or directory INFO: FreeSurfer build stamps do not match Subject Stamp: Current Stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0 INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects Actual FREESURFER_HOME /Applications/freesurfer /Applications/freesurfer/subjects/joya: No such file or directory. [1]+ Exit 1 recon-all -i T1_original_joya.nii -subject joya -a Thank you, Jasmin Jasmin Alves Predoctoral Student Medical Biology Graduate Program University of Southern California jal...@usc.edu
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
