Area in mm^2 On 01/06/2016 01:16 PM, Tara Miskovich wrote: > Thank you so much, this is incredibly helpful. And just to be clear is > this the minimum area or vertices? > > Tara > > On Wed, Jan 6, 2016 at 12:01 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > > First, look in the qdec output folder to determine the FWHM in the > fwhm.dat file. Assuming the value is 10, you are looking at the left > hemisphere, you used a positive tail, and the voxel-wise threshold was > 1.3 (p<.05), then you would find the following file > > > $FREESURFER_HOME/average/mult-comp-cor/fsaverage/lh/cortex/fwhm10/pos/th13/mc-z.cdf > > This will have 8 columns, but you will be interested in columns 2 > and 4 > (MaxClustBin and MaxClustCDF). The MaxClustCDF is the p-value for the > given cluster size MaxClustBin. Eg, on line 25: > > 25 473.758087 0.021000 0.169000 0.045775 11.261296 > 0.002800 0.325000 > > indicates that the clustersize must be at least 473.758 to have a > cluster p-value of .045775 > > clear? > > doug > > > > On 01/05/2016 08:35 PM, Tara Miskovich wrote: > > Hello Freesurfer experts, > > > > I need help me finding how to get the minimum number of vertices > > required to pass the cluster-corrected threshold with monte carlo > > simulations used in qdec for a surface based analysis? > > > > This is per a reviewer request, but I cannot find anything on > the wiki > > or in the mail archives on how to get this value. > > > > Can someone please help me with this issue? > > > > -- > > Thank you, > > > > Tara > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 <tel:617-724-2358> > Fax: 617-726-7422 <tel:617-726-7422> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > > -- > Thank you, > > Tara A. Miskovich, M.S. > Affective Neuroscience Laboratory > Department of Psychology > University of Wisconsin-Milwaukee > 334 Garland Hall > misko...@uwm.edu <mailto:misko...@uwm.edu> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
