No, you need to simultaneously estimate the T1. Mike Harms did this 
years ago.

On 12/22/15 11:37 AM, sha...@nmr.mgh.harvard.edu wrote:
> Hi Surfers
>     We are wondering if we can use freesurfer to analyze ECG-gated fmri. As
> far as I see, mkanalysis-sess expects a fix TR. Since we are in the
> design stage, any hint or suggestion to facilitate future data analysis
> will be highly appreciated.
>
> Regards
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>

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