Hi all, I have a series of volumetric GM masks that I used to calculate a functional connectivity matrix. Now I want to use the same masks to calculate a structural connectivity matrix (number of streamlines). I registered all masks in diffusion space for all subjects. My idea was to use probtrackx2 with a matrix option (and list of waypoints), but I am really unsure about which options I have to use: --omatrix1 and then sum all voxels of the mask or --omatrix3?
Could you help me in writing my script? Thank you for any help Angela _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
