Hi Bruce, DELL R910 Intel(R) Xeon(R) CPU E7520 @ 1.87GHz (16 cores) 32 Go RAM CentOS release 5.10 (Final) kernel 2.6.18-371.3.1.el5
On Mon, Nov 23, 2015 at 7:32 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Genevieve > > I just tracked this down and it is a bug in mri_cc. If you tell Zeke your > hardware/software environment he can get you a new version that should work > > cheers > Bruce > > > On Mon, 23 Nov 2015, UQAM wrote: > > Hi Bruce, >> Please find the two files attached. >> >> Genevieve >> >> >> >> On Mon, Nov 23, 2015 at 2:39 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> wrote: >> Hi Geneviève >> >> if you send us the $SUBJECTS_DIR/CColorLUT.txt and >> $SUBJECTS_DIR/e0070/mri/aseg.12segmentsCC.mgz and we will take a >> look >> >> cheers >> Bruce >> On Mon, 23 Nov 2015, UQAM wrote: >> >> Hi, >> This a a "re-posting" of a question I've raised last week ; ) >> >> I would like to segment the corpus callosum into twelve even >> lenght segments >> instead of the five segments that freesurfer includes by >> default. >> >> - First I ran a mri_cc on subject e0070: >> >> mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.12segmentsCC.mgz >> -d 12 e0070 >> >> - Then I edited the ColorLUT.txt file and renamed it >> CColorLUT.txt (see >> attachment, segments 251 to 262). >> >> - Finally I ran a mri_segstats to compute the statistics on >> segmented >> volumes. >> >> mri_segstats seg >> $SUBJECTS_DIR/e0070/mri/aseg.12segmentsCC.mgz --ctab >> $SUBJECTS_DIR/CColorLUT.txt --nonempty --excludeid 0 sum >> --e0070_CC12.aseg.stats >> >> The e0070_CC12.aseg.stats file still displays only five >> segments of the >> corpus callosum. >> >> Any tips or clues on how I could do things differently to get >> 12 segments? >> >> Thanks in advance, >> >> Geneviève >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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