This is an unfortunate consequence of mixing and matching various subcomponents of freesurfer. I will private message you a potential work around.
-Zeke > Dear FS experts > > we are running TRACULA on a Mac (OS X 10.7.5) and faced an error related > to mri_convert. > > we then donloaded (as suggested in the FS archives) the modified file > mri_convert.mac from here > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > and the initial error disappeared. > > However, when running trac-all FS claims that the license is not valid > anymore, although there is no error when running > recon-all. > > [Tschgiallos-iMac-2:~] tschgiallo% trac-all -prep -c > /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/tracula_config_dudo.txt > INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects > INFO: Diffusion root is > /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/results > Actual FREESURFER_HOME /Applications/freesurfer > trac-preproc -c > /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/results/0028197/scripts/dmrirc.local > -log > /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/results/0028197/scripts/trac-all.log > -cmd > /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/results/0028197/scripts/trac-all.cmd > #------------------------------------- > /Applications/freesurfer/bin/trac-preproc > #------------------------------------- > #@# Image corrections Mo 16 Nov 2015 09:57:39 CET > mri_convert > /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/prepare/0028197/0028197_dti.nii.gz > /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/results/0028197/dmri/dwi_orig.nii.gz > mri_convert > /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/prepare/0028197/0028197_dti.nii.gz > /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/results/0028197/dmri/dwi_orig.nii.gz > -------------------------------------------------------------------------- > ERROR: Invalid FreeSurfer license key found in license file > /Applications/freesurfer/.license > If you are outside the NMR-Martinos Center, > go to http://surfer.nmr.mgh.harvard.edu/registration.html to > get a valid license file (it's free). > If you are inside the NMR-Martinos Center, > make sure to source the standard environment. > -------------------------------------------------------------------------- > $Id: mri_convert.c,v 1.222 2015/06/08 18:22:26 greve Exp $ > reading from > /Users/tschgiallo/Desktop/0_vivian_dudo/tracula/prepare/0028197/0028197_dti.nii.gz... > Darwin Tschgiallos-iMac-2.local 11.4.2 Darwin Kernel Version 11.4.2: Thu > Aug 23 16:25:48 PDT 2012; root:xnu-1699.32.7~1/RELEASE_X86_64 x86_64 > > trac-preproc exited with ERRORS at Mo 16 Nov 2015 09:57:40 CET > > [Tschgiallos-iMac-2:~] tschgiallo% > > > Any idea where the problem is? > > Thanks in advance > Regards > Jürgen > > ----------------------------------------------------------------------------------------------------- > University of Zurich > Dr. Jürgen Hänggi, Ph.D. > Department of Psychology > Division Neuropsychology > Binzmuehlestrasse 14, PO Box 25 > 8050 Zurich, Switzerland > > 0041 44 635 73 97 (phone office) > 0041 76 445 86 84 (phone mobile) > 0041 44 635 74 09 (fax office) > BIN 4.D.04 (office room number) > > j.haen...@psychologie.uzh.ch (email) > http://www.psychologie.uzh.ch/neuropsy/ (website) > http://www.juergenhaenggi.ch (private website) > > This e-mail (and any attachment/s) contains confidential and/or privileged > information. If you are not the intended recipient (or have received this > e-mail in error) please notify the sender immediately and destroy this > e-mail. Any unauthorised copying, disclosure or distribution of the > material in this e-mail is strictly forbidden. > ----------------------------------------------------------------------------------------------------- > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
