Hi Doug,
Command: selxavg3-sess -s hc016 -analysis msit.analysis.sm04.b0dc.mni305 -force
Folder: /autofs/space/lilli_002/users/DARPA-FAST
$SUBJECTS_DIR: /autofs/space/lilli_001/users/DARPA-MEG/freesurfs
The problem might actually lie with preprocessing.
Just looking at file sizes, the fmcpr.sm4.mni305.2mm.b0dc.nii.gz file size for
hc016 is 471kb, but it's ~46mb for other subjects. The lh and rh files for
hc016 are also pretty small compared to other subjects. Not sure what's causing
this.
This is the preproc command I used: preproc-sess -s hc016 -surface fsaverage
lhrh -mni305 -fwhm 4 -per-run -fsd msit -nostc -b0dc -force
Thanks for your help!
- Afsana
______________________________
Afsana Afzal
Clinical Research Coordinator
Massachusetts General Hospital
Division of Neurotherapeutics
Department of Psychiatry: Neurosciences
149 13th St, Room 2612
Charlestown, MA 02129
Phone: 617-643-5129
Fax: 617-726-4078
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas Greve
[gr...@nmr.mgh.harvard.edu]
Sent: Friday, November 13, 2015 5:04 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] FSFAST First-Levels: Fast_selxavg3() ERROR
hmmm, not sure. Can you send me your selxavg3-sess command and the folder your
ran it from and the $SUBJECTS_DIR ?
doug
On 11/13/15 4:16 PM, Afzal, Afsana wrote:
Hi,
I'm doing first level analysis in FSFAST and I'm consistently getting the
following error when running fast_selxavg3():
Saving to
/autofs/space/lilli_002/users/DARPA-FAST/hc016/msit/msit.analysis.sm04.b0dc.mni305/rho1mn.sm.nii.gz
SmoothOnly requested, so exiting now
Found 0 voxels with corrected AR1 > 0.90
Whitening
Attempted to access indedge(0); index must be a positive integer or logical.
Error in fast_histeq (line 53)
if(indedge(end) ~= ny) indedge = [indedge ny]; end
Error in fast_selxavg3 (line 640)
[edge bincenter binmap] = fast_histeq(nrho1mn.vol(indmask), flac0.acfbins);
>> ------------------------------------------
ERROR: fast_selxavg3() failed\n
I'm only getting the error for mni305 (lh and rh analyses are completing
without a hitch). I have re-preprocessed and attempted to run the analysis
several times, but without any success. It's not clear what the error means or
what's causing it.
Thank you for any help,
Afsana
______________________________
Afsana Afzal
Clinical Research Coordinator
Massachusetts General Hospital
Division of Neurotherapeutics
Department of Psychiatry: Neurosciences
149 13th St, Room 2612
Charlestown, MA 02129
Phone: 617-643-5129
Fax: 617-726-4078
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