Yes, it works now!
Thank you so much.
Have a great weekend,
Elissa
On Fri, Nov 13, 2015 at 12:40 PM, Martin Reuter <mreu...@nmr.mgh.harvard.edu
> wrote:
> Hi Elissa,
>
> this is the real error:
> SyntaxError: Missing parentheses in call to 'print'
>
> those scripts use the Python 2 print command and you are running them with
> Python 3.
>
> In 3, print needs to be like
> print("Hello world!")
> in 2 it was simply
> print "Hello world!"
>
> so make sure you run them with Python 2.
>
> Best, Martin
>
>
> On 11/13/2015 03:04 PM, Elissa Ash wrote:
>
> Dear Freesurfer support,
>
> I am very new to freesurfer and I thank you in advance for your
> assistance. I have been trying to run the group analysis tutorial (qdec)
> and I have encountered the following error messages. I was unable to
> generate the stats data tables in the tutorial and received the following
> types of error messages:
>
> 1) When trying to run asestats2table in qdec I get an error message that
> says that the subjects are not specified although they are. The
> $SUBJECTS_DIR is correct. I even encounter the same error when I just try
> to run asegstats2table --help (see below):
>
> tegmentum:group_analysis_tutorial gazzlab16$ asegstats2table --subjects
> 004 045 091 --meas volume --tablefile aseg_stats.txt
> File "/Applications/freesurfer/bin/asegstats2table", line 186
> print 'ERROR: subjects are not specified (use --subjects SUBJECTS)'
> ^
> SyntaxError: invalid syntax
>
> tegmentum:freesurfer gazzlab16$ asegstats2table --help
> File "/Applications/freesurfer/bin/asegstats2table", line 186
> print 'ERROR: subjects are not specified (use --subjects SUBJECTS)'
> ^
> SyntaxError: invalid syntax
>
> 2) When trying to run asestats2table I get an error message that says that
> at least one subject must be provided although they are. The $SUBJECTS_DIR
> is correct. I even encounter the same error when I just try to run
> aparcstats2table --help (see below):
>
> tegmentum:group_analysis_tutorial gazzlab16$ aparcstats2table --subjects
> 004 045 091 --hemi rh --meas thickness --tablefile aparc_stats.txt
> File "/Applications/freesurfer/bin/aparcstats2table", line 151
> print 'ERROR: atleast 1 subject must be provided'
> ^
> SyntaxError: Missing parentheses in call to 'print'
> tegmentum:group_analysis_tutorial gazzlab16$ aparcstats2table --help
> File "/Applications/freesurfer/bin/aparcstats2table", line 151
> print 'ERROR: atleast 1 subject must be provided'
> ^
> SyntaxError: Missing parentheses in call to 'print'
>
>
> I am not sure how to proceed. Thank you again for your assistance.
>
> Sincerely,
> Elissa
> --
> Elissa Ash, MD, PhD
> Director, Center for Memory and Attention Disorders
> Department of Neurology
> Tel Aviv Sourasky Medical Center
>
>
>
>
> _______________________________________________
> Freesurfer mailing
> listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> --
> Martin Reuter, PhD
> Assistant Professor of Radiology, Harvard Medical School
> Assistant Professor of Neurology, Harvard Medical School
> A.A.Martinos Center for Biomedical Imaging
> Massachusetts General Hospital
> Research Affiliate, CSAIL, MIT
> Phone: +1-617-724-5652
> Web : http://reuter.mit.edu
>
>
> _______________________________________________
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>
>
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> is
> addressed. If you believe this e-mail was sent to you in error and the
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> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
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> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
--
Elissa Ash, MD, PhD
Director, Center for Memory and Attention Disorders
Department of Neurology
Tel Aviv Sourasky Medical Center
6 Weizmann St.
Tel Aviv 64239, Israel
972-3-6973698
fax: 972-3-695-0365
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