I guess upload the dataset and we'll see if we can figure out what is going on Bruce On Thu, 12 Nov 2015, Nicole Zurcher wrote:
> > Hi Bruce/hi all, > > Yes I am sure that I did not run out of disk space and I still get this > error message for mris_calc. > Do you have any suggestions? > > Thanks in advance > Nicole > > >> Message: 1 >> Date: Mon, 9 Nov 2015 12:34:24 -0500 (EST) >> From: Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> Subject: Re: [Freesurfer] recon-all error message >> To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> >> Message-ID: >> <alpine.lrh.2.20.1511091234090.3...@gate.nmr.mgh.harvard.edu> >> Content-Type: text/plain; charset=US-ASCII; format=flowed >> >> Hi Nicole >> >> that's a very strange error. Are you sure that you didn't run out of disk >> space? >> >> Bruce > >> On Mon, 9 Nov 2015, Nicole Zurcher wrote: >> >>> Dear all, >>> >>> One of my freesurfer recons is failing and I am not sure how to >>> troubleshoot. >>> >>> This is the error message that I get at the end of the recon-all log >>> file: >>> >>> mris_calc -o lh.area.mid lh.area add lh.area.pial >>> WARNING: # of slices=-106 in header - assuming 124... >>> read_signa([path]/surf/I.001): could not open file >>> No such file or directory >>> mris_calc: could not establish read access to 'lh.area'. >>> No such file or directory >>> >>> and this is the command that appears in the recon-all.error >>> CMD mris_calc -o lh.area.mid lh.area add lh.area.pial >>> >>> See attachment for entire recon-all log file. Any help is greatly >>> appreciated. >>> >>> Thanks a lot >>> Nicole >>> >> > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
