why do you need to do it in matlab? Why not use a shell script (tcsh, sh, python, etc)? If you run it with --help, it will give you info on how to run it.
On 11/10/2015 12:56 PM, Fatemeh.Molaei-Vaneghi wrote: > Dear FreeSurfers, > > I am using "mri_vol2surf" to map my SPM processed t images onto 9 > intermediate surfaces created by "mris_expand". When every step is done > manually it works perfectly. However, for very large datasets I would need to > run mri_vol2surf for multiple subjects, multiple conditions, multiple ROIs, > and etc. Therefore, automising the command to be executed on multiple > datasets at once is a requirement. Unfortunately there is no Matlab function > for mri_vol2surf, this brings me to my question: how can I use mri_vol2surf > in Matlab for multiple datasets, how the command must be written, how the > variables and directories must be redefined so Matlab and FreeSurfer both > have access to what they need. In other words, how mri_vol2surf should be > used, either in Matlab or in shell, in order to be executed on multiple > datasets at once? As a side note I am using Mac OS 10.9.5 with FreeSurfer > v5.3.0. Thank you in advance for your guidance. > > Kind Regards, > > Fatemeh Molaei-Vaneghi > > Max Planck Institute for Biological Cybernetics > Tübingen > Germany > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
