Sounds like you are trying to do soap bubble interpolation (?). I don't think we have a binary for that. Maybe Bruce knows of one. You could hack something together, with smoothing (mri_surf2surf), creating binary masks (mris_binarize), and masking (mri_mask), and basic math operations (fscalc).
On 11/09/2015 02:07 PM, Gardus III, John D wrote: > Hello all, > > I'm in the process of mapping some non-FreeSurfer derived outcomes to > a curv file containing the vertices of the pial surface mesh. I have > values at roughly 100 vertices, leaving some 37000 with 'nan'. > > I then run an intra-subject surf2surf command in an attempt to > interpolate between vertices for which I have values. The problem is > that the NaNs pull the existing values down, resulting in a > smearing/dilution of my outcomes. > > Is there any way to interpolate and make the intervening vertices > purely a function of nearby vertices for which values exist? > > Thanks, > > John > > > This e-mail message, including any attachments, is for the sole use of > the intended recipient(s) and may contain confidential and privileged > information. Any unauthorized review, use, disclosure or distribution > is prohibited. If you are not the intended recipient, please contact > the sender by e-mail and destroy all copies of the original. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
