Hi list, this error is still occurring: mri_convert $SUBJECTS_DIR/subj/mri/MRS_MASK.nii.gz $SUBJECTS_DIR//subj/mri/MRS_MASK.mgz fcseed-config -segid 1 -seg $SUBJECTS_DIR//subj/mri/MRS_MASK.mgz -fsd rest -mean -cfg MRS_MASK.config fcseed-sess -s -cfg MRS_MASK.config
During fcseed-sess -s subj -cfg MRS_MASK.config Voxel Volume is 64.5752 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation 0 1 0 0.000 MRIalloc(0, 1, 1): bad parm Reporting on 0 segmentations Computing spatial average of each frame Writing to /Applications/freesurfer/subjects/fMRI/sub/rest/001/tmp. fcseed-sess.97908/avgwf.mgh Segmentation fault I have read your previous message and you can check the MRS voxel features. MRS voxel mask is in subj directory where I have run recon all -all. data_type FLOAT32 dim1 256 dim2 256 dim3 256 dim4 1 datatype 16 pixdim1 1.000000 pixdim2 1.000000 pixdim3 1.000000 pixdim4 0.010747 cal_max 0.0000 cal_min 0.0000 file_type NIFTI-1+ The features are same of other subject that runs fine. data_type FLOAT32 dim1 256 dim2 256 dim3 256 dim4 1 datatype 16 pixdim1 1.000000 pixdim2 1.000000 pixdim3 1.000000 pixdim4 0.010747 cal_max 0.0000 cal_min 0.0000 file_type NIFTI-1+ Thank you very much. Stefano >----Messaggio originale---- >Da: std...@virgilio.it >Data: 16-ott-2015 23.15 >A: <freesurfer@nmr.mgh.harvard.edu> >Ogg: [Freesurfer] R: Re: R: import FS-FAST results in FSL > >I'd like to open with FSLview the sig.nii.gz which is produced by >selxavg3-sess. >If I use mri_surf2vol, which is the template to added in --template? >It should be in Tailairach space? Where can I find the template that I >should added? >Thanks, > >Stefano > >subj/rest/fc.seed.surf.lh/L_seed/sig.nii.gz >data_type FLOAT32 >dim1 27307 >dim2 1 >dim3 6 >dim4 1 >datatype 16 >pixdim1 1.000000 >pixdim2 1.000000 >pixdim3 1.000000 >pixdim4 1100.000000 >cal_max 49.1815 >cal_min -12.3855 >file_type NIFTI-1+ > > > > > > > >Thanks, > >Stefano > > >>----Messaggio originale---- >>Da: gr...@nmr.mgh.harvard.edu >>Data: 29-set-2015 22.09 >>A: <freesurfer@nmr.mgh.harvard.edu> >>Ogg: Re: [Freesurfer] R: import FS-FAST results in FSL >> >>Do you mean surface-based analysis? You'd have to put them back into >the >>volume using mri_surf2vol, write them out as nifti and then run >fslview >>on them >> >>On 09/29/2015 11:17 AM, std...@virgilio.it wrote: >>> >>> Hi list, >>> >>> I would like to import FS-FAST results (conjunction maps) in >FSL, >>> opening them by fslview. >>> Could you provide me any suggestion? >>> >>> Thank you very much >>> Best regards, >>> >>> >>> Stefano >>> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >>-- >>Douglas N. Greve, Ph.D. >>MGH-NMR Center >>gr...@nmr.mgh.harvard.edu >>Phone Number: 617-724-2358 >>Fax: 617-726-7422 >> >>Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>Outgoing: ftp://surfer.nmr.mgh.harvard. >edu/transfer/outgoing/flat/greve/ >> >>_______________________________________________ >>Freesurfer mailing list >>Freesurfer@nmr.mgh.harvard.edu >>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >>The information in this e-mail is intended only for the person to >whom it is >>addressed. If you believe this e-mail was sent to you in error and >the e-mail >>contains patient information, please contact the Partners Compliance >HelpLine at >>http://www.partners.org/complianceline . If the e-mail was sent to >you in error >>but does not contain patient information, please contact the sender >and properly >>dispose of the e-mail. >> >> > >_______________________________________________ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
