there won't be any interferance if you use -openmp 1 (which I think is the
default) as long as you have more processors than recon-all jobs (and
enough RAM to support them all)
On Tue, 3 Nov 2015,
Julio Alberto González Torre wrote:
One question about "-openmp". If I run multiple "recon-all" in different
terminals without using this flag...
Is there any problem with the 'gcareg' stage? For example, is there any
interference between subjects reconstruction?
Thanks.
2015-10-16 15:07 GMT+02:00 Bruce Fischl <fis...@nmr.mgh.harvard.edu>:
Hi Linda
did you actually include the angle brackets? If so, try without
them. And
don't you want 4 there instead of 8 (if you have 4 processors)?
On
Fri, 16 Oct 2015, Linda BOUMGHAR wrote:
> I would like to use freesurfer with OpenMP, with 4 processors.
I wrote this :
> recon-all -all -i
> /mnt/linuxwin/lboumgha/data/CENTER_TBI/tro/suj1/T1.nii.gz
-subjid
> subj1 -openmp <8>
> and I got this error message :
>
> bash: syntax error near unexpected token `8'
>
> What is the good syntax if I want tu use OpenMP, please?
> Great regards,
> Linda Boumghar
>
>
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