what version are you using? I think this won't happen in V6,but if you upload the subject dir I can check for you. To fix it check and correct the wm.mgz and the aseg.mgz in that region

cheers
Bruce
On Thu, 29 Oct 2015, Thục Trinh wrote:

Hi Freesurfer experts,
I ran recon-all for our subjects and there is a problem with the wrong
segmentation between the white/gray matter. this error appears in couples
continued slices. Picture are attached.
Do you have any suggestion to fix this error. 

Thank you,
Trinh

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