Hi, I tried the chmod command, but it did not work. How I check that I've downloaded the correct version? Thank you very much Timothy
On Thu, Oct 1, 2015 at 8:10 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > can you try chmod a+x on one of them and see if it can then be executed? > e.g.: > > chmod a+x /home/tle7/freesurfer/bin/mri_convert > /home/tle7/freesurfer/bin/mri_convert > > and see if you get an error. If not, you probably downloaded the wrong > hardware version > cheers > Bruce > > > > On Tue, 29 Sep 2015, Timothy Quang-Tin Le wrote: > > >> Hello, >> When I run the command "sFSstart" on version 5.0.0, I am receiving the >> messages below. Would you please explain to me what the problem is? It >> seems like there is trouble accessing the bin. >> Thank you >> >> -------- freesurfer-Linux-centos5_x86_64-stable-pub-v5.0.0 -------- >> Setting up environment for FreeSurfer/FS-FAST (and FSL) >> FREESURFER_HOME /home/tle7/freesurfer >> FSFAST_HOME /home/tle7/freesurfer/fsfast >> FSF_OUTPUT_FORMAT nii >> SUBJECTS_DIR /home/tle7/freesurfer/subjects >> MNI_DIR /home/tle7/freesurfer/mni >> tle7@sni-vcs-gotlib:~$ sFSstart practicemotherdaughter 00152-DT2 >> studyPath /home/tle7/freesurfer/subjects/practicemotherdaughter >> H 0 >> checking sid number 00152-DT2 >> 1 >> 00152-DT2/MR.1.2.840.113619.2.283.4120.7575399.15360.1319907833.100.dcm >> Subject Stamp: freesurfer-Linux-centos5_x86_64-stable-pub-v5.0.0 >> Current Stamp: freesurfer-Linux-centos5_x86_64-stable-pub-v5.0.0 >> INFO: SUBJECTS_DIR is /home/tle7/freesurfer/subjects >> Actual FREESURFER_HOME /home/tle7/freesurfer >> Linux sni-vcs-gotlib.stanford.edu 3.13.0-61-generic #100-Ubuntu SMP >> Wed Jul 29 11:21:34 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux >> /home/tle7/freesurfer/bin/mri_convert: Exec format error. Binary file >> not executable. >> /home/tle7/freesurfer/bin/flirt.fsl: Exec format error. Binary file >> not executable. >> /home/tle7/freesurfer/bin/mri_convert: Exec format error. Binary file >> not executable. >> /home/tle7/freesurfer/bin/tkregister2_cmdl: Exec format error. Binary >> file not executable. >> /home/tle7/freesurfer/bin/mri_normalize: Exec format error. Binary >> file not executable. >> /home/tle7/freesurfer/bin/mri_watershed: Exec format error. Binary >> file not executable. >> /home/tle7/freesurfer/bin/mri_gcut: Exec format error. Binary file not >> executable. >> /home/tle7/freesurfer/bin/mri_segment: Exec format error. Binary file >> not executable. >> /home/tle7/freesurfer/bin/mri_label2label: Exec format error. Binary >> file not executable. >> /home/tle7/freesurfer/bin/mri_em_register: Exec format error. Binary >> file not executable. >> /home/tle7/freesurfer/bin/mri_ca_normalize: Exec format error. Binary >> file not executable. >> /home/tle7/freesurfer/bin/mri_ca_register: Exec format error. Binary >> file not executable. >> /home/tle7/freesurfer/bin/mri_ca_label: Exec format error. Binary file >> not executable. >> /home/tle7/freesurfer/bin/mri_pretess: Exec format error. Binary file >> not executable. >> /home/tle7/freesurfer/bin/mri_fill: Exec format error. Binary file not >> executable. >> /home/tle7/freesurfer/bin/mri_tessellate: Exec format error. Binary >> file not executable. >> /home/tle7/freesurfer/bin/mri_concatenate_lta: Exec format error. >> Binary file not executable. >> /home/tle7/freesurfer/bin/mri_normalize_tp2: Exec format error. Binary >> file not executable. >> /home/tle7/freesurfer/bin/mris_smooth: Exec format error. Binary file >> not executable. >> /home/tle7/freesurfer/bin/mris_inflate: Exec format error. Binary file >> not executable. >> /home/tle7/freesurfer/bin/mris_curvature: Exec format error. Binary >> file not executable. >> /home/tle7/freesurfer/bin/mris_sphere: Exec format error. Binary file >> not executable. >> /home/tle7/freesurfer/bin/mris_fix_topology: Exec format error. Binary >> file not executable. >> /home/tle7/freesurfer/bin/mris_topo_fixer: Exec format error. Binary >> file not executable. >> /home/tle7/freesurfer/bin/mris_ca_label: Exec format error. Binary >> file not executable. >> /home/tle7/freesurfer/bin/mris_euler_number: Exec format error. Binary >> file not executable. >> /home/tle7/freesurfer/bin/mris_make_surfaces: Exec format error. >> Binary file not executable. >> /home/tle7/freesurfer/bin/mris_register: Exec format error. Binary >> file not executable. >> /home/tle7/freesurfer/bin/mris_volmask: Exec format error. Binary file >> not executable. >> /home/tle7/freesurfer/bin/mris_anatomical_stats: Exec format error. >> Binary file not executable. >> /home/tle7/freesurfer/bin/mrisp_paint: Exec format error. Binary file >> not executable. >> /home/tle7/freesurfer/bin/mris_curvature_stats: Exec format error. >> Binary file not executable. >> /home/tle7/freesurfer/bin/mris_calc: Exec format error. Binary file >> not executable. >> /home/tle7/freesurfer/bin/mri_robust_register: Exec format error. >> Binary file not executable. >> /home/tle7/freesurfer/bin/mri_robust_template: Exec format error. >> Binary file not executable. >> /home/tle7/freesurfer/bin/mri_and: Exec format error. Binary file not >> executable. >> /home/tle7/freesurfer/bin/mri_or: Exec format error. Binary file not >> executable. >> /home/tle7/freesurfer/bin/mri_fuse_segmentations: Exec format error. >> Binary file not executable. >> /home/tle7/freesurfer/bin/mri_segstats: Exec format error. Binary file >> not executable. >> -cw256 option is now persistent (remove with -clean-cw256) >> /home/tle7/freesurfer/subjects/00152-DT2_v5 >> >> >> >> mri_convert/home/tle7/freesurfer/subjects/practicemotherdaughter/rawdata/00152-DT2/MR. >> 1.2.840.113619.2.283.4120.7575399.15360.1319907833.100.dcm >> /home/tle7/freesurfer/subjects/00152-DT2_v5/mri/orig/001.mgz >> >> /home/tle7/freesurfer/bin/mri_convert: Exec format error. Binary file >> not executable. >> Linux sni-vcs-gotlib.stanford.edu 3.13.0-61-generic #100-Ubuntu SMP >> Wed Jul 29 11:21:34 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux >> >> recon-all -s 00152-DT2_v5 exited with ERRORS at Mon Sep 28 10:43:57 >> PDT 2015 >> >> tle7@sni-vcs-gotlib:~$ >> >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
