Dear Freesurfer Experts, I am trying to run a longitudinal analysis. I have done the first three steps of the analysis. Now, I am trying to visualize my results. However, I am having trouble doing the last step of the analysis: https://surfer.nmr.mgh.harvard.edu/fswiki/RepeatedMeasuresAnova bash-3.2$ mri_glmfit --glmdir lh.rmanova --y lh.thickness.sm15.mgh --fsgd long.table.fsgd doss --surface lh.thickness.sm15.mgh --C contrast.mtx --C contrast2.mtx --C mean.mtxgdfReadHeader: reading long.table.fsgdINFO: DeMeanFlag keyword not found, DeMeaning will NOT be done.Continuous Variable Means (all subjects)0 TP1-vs-TP2 0 1Class Means of each Continuous Variable1 Subject1 0.0000 2 Subject2 0.0000 3 Subject3 0.0000 4 Subject4 0.0000 5 Subject5 0.0000 6 Subject6 0.0000 7 Subject7 0.0000 8 Subject8 0.0000 9 Subject9 0.0000 10 Subject10 0.0000 11 Subject11 0.0000 INFO: gd2mtx_method is dossReading source surface /users/dusan/MRI/Ch_Sport/lh.thickness.sm15.mgh/surf/--C.contrast.mtxMRISread(/users/dusan/MRI/Ch_Sport/lh.thickness.sm15.mgh/surf/--C.contrast.mtx): could not open fileNot a directorymri_glmfit: could not read surface /users/dusan/MRI/Ch_Sport/lh.thickness.sm15.mgh/surf/--C.contrast.mtxNot a directory Any suggestions what I should do??? I dont understand what/which surface shoul I use? Many thanks!
Dusan
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